Plant FIBer expression Database

Potri.008G173900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G17740 699 / 0 Peptidase S41 family protein (.1.2)
AT3G57680 259 / 4e-80 Peptidase S41 family protein (.1)
AT5G46390 208 / 5e-61 Peptidase S41 family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G055400
[exp]
265 / 3e-82 AT3G57680 668 / 0.0 Peptidase S41 family protein (.1)
Potri.011G078700
[exp]
214 / 1e-63 AT5G46390 575 / 0.0 Peptidase S41 family protein (.1.2)
Potri.010G063400
[exp]
184 / 2e-56 AT4G17740 174 / 3e-53 Peptidase S41 family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004402
[exp]
666 / 0 AT4G17740 610 / 0.0 Peptidase S41 family protein (.1.2)
Lus10023704
[exp]
642 / 0 AT4G17740 597 / 0.0 Peptidase S41 family protein (.1.2)
Lus10040494
[exp]
246 / 2e-75 AT3G57680 692 / 0.0 Peptidase S41 family protein (.1)
Lus10004601
[exp]
226 / 9e-68 AT5G46390 619 / 0.0 Peptidase S41 family protein (.1.2)
Lus10004545
[exp]
162 / 3e-44 AT5G46390 488 / 2e-170 Peptidase S41 family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0466 PDZ-like PF00595 PDZ PDZ domain
CL0127 ClpP_crotonase PF03572 Peptidase_S41 Peptidase family S41
Representative CDS sequence
>Potri.008G173900.1 pacid=42805894 polypeptide=Potri.008G173900.1.p locus=Potri.008G173900 ID=Potri.008G173900.1.v4.1 annot-version=v4.1
ATGAGCATGGAGGTTGTCCTTGCTCTCTCTCCATTTCCCCGTTTCTGTCTTCCTAACACCAACCTAAAAACCACTCTCAGCTCCTCAAACTCTCAGGTTC
TGTTATGGAGATCCCCGTTAATGAACGTACAGTTAAATCACTACTACAGCAGAAAGCGTAGGGGCTGCATTAATGGTGGCGGAGCTTCTAGGCGCAGCCT
TTGGCCTCAGTTTTCGAACAGCTATGATCGATGCAATCTCAAGTTGGGGAAGTTTATTAGCAGGCTCCGAGAGTTTATGAATTCTTCAGAAAAAATGAGA
AAACATGTTTCTTCTACTCTTTTCACCCGGTTGGTTGTTTCAGTGTTGATGGTTTCTTTTGCGGTCAGCAATTCACCCTCTTGGGCTCTGAGCGAAGAAA
ATCTTCTCTTCTTAGAGGCTTGGAGGACGATTGACCGTGCTTATGTTGACAAAACGTTCAATGGACAAAGTTGGTTTCGGTACAGAGAAAATGCTTTGCG
CAATGAACCGATGAACACGCGCGAAGAGACATACACGGCTATCAGGAAGATGCTTGCCACACTTGATGATCCTTTCACTCGATTTCTCGAACCTGAGAAG
TTCAAGAGTTTGCGGTCTGGAACAAAAAGTGCTGTTACTGGTGTAGGGCTGTCAATAGGCTATCCTACAGGGTCTGATGGATCACCTGCTGGACTTGTTG
TCATTTCAGCTGCTCCAGGAGGTCCTGCAAATAAGGCTGGCATTGTATCTGGGGACATTATCTTGGCAATAAATGATACAGGCACAGAAAGCATGGGCAT
ATATGAAGCAGCAGACCGGTTGCAGGGACCTGAAGGAAGTTCAGTAGAATTAACCATTCGCAGTGGGCAAGAAATAAAGCATCTTGCTTTAACGCGAGAG
AAAGTGTCTCTAAATCCAGTGAAGTCAAGACTCTGTGTAATTCCTGGTTCAGGGAAGGATTCCCCCAGGATTGGGTATATTAAACTGACAACATTTAACC
AAAATGCTTCAGGTGCTATCAGGGAAGCTATCAATACTTTGAGGAGTAATAATGTTAATGCCTTTGTGTTGGACCTTCGAGATAATAGTGGTGGCTTGTT
TCCAGAAGGGATTGAGATCGCCAAGATTTGGTTAGACAAAGGTGTCATTGTGTATATTTGCGATAGTCGTGGGGTTAGAGATATATATGACACGGATGGA
AGTAGTGCAATTGCAACTTCAGAACCCCTTGCTGTACTGGTGAACAAGGGAACTGCGAGTGCAAGTGAAATATTAGCCGGTGCATTGAAAGACAATAAGC
GTGCTGTTTTATTTGGAGAACCCACATTTGGAAAAGGCAAGATTCAATCAGTTTTTCAGCTATCTGATGGTTCTGGCTTGGCGGTTACTGTTGCTCGTTA
TGAGACCCCTGATCACACTGATATTGACAAGGTTGGTGTGATTCCAGACCATCCACTTCCTAGAACTTTTCCGAAGGATGAGGAAGGTTTCTGCGGCTGC
CTCCAAGACCCTGCATCTACTTTCTACGTGAATAGGGGCCAGCTGTTTGCGAGATAG
AA sequence
>Potri.008G173900.1 pacid=42805894 polypeptide=Potri.008G173900.1.p locus=Potri.008G173900 ID=Potri.008G173900.1.v4.1 annot-version=v4.1
MSMEVVLALSPFPRFCLPNTNLKTTLSSSNSQVLLWRSPLMNVQLNHYYSRKRRGCINGGGASRRSLWPQFSNSYDRCNLKLGKFISRLREFMNSSEKMR
KHVSSTLFTRLVVSVLMVSFAVSNSPSWALSEENLLFLEAWRTIDRAYVDKTFNGQSWFRYRENALRNEPMNTREETYTAIRKMLATLDDPFTRFLEPEK
FKSLRSGTKSAVTGVGLSIGYPTGSDGSPAGLVVISAAPGGPANKAGIVSGDIILAINDTGTESMGIYEAADRLQGPEGSSVELTIRSGQEIKHLALTRE
KVSLNPVKSRLCVIPGSGKDSPRIGYIKLTTFNQNASGAIREAINTLRSNNVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDG
SSAIATSEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPTFGKGKIQSVFQLSDGSGLAVTVARYETPDHTDIDKVGVIPDHPLPRTFPKDEEGFCGC
LQDPASTFYVNRGQLFAR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G17740 Peptidase S41 family protein (... Potri.008G173900
[exp]
0 1
AT2G32500 Stress responsive alpha-beta b... Potri.014G154900
[exp]
1.41 0.9788
AT5G01920 STN8 State transition 8, Protein ki... Potri.016G138500
[exp]
3.00 0.9736
AT5G19940 Plastid-lipid associated prote... Potri.006G276400
[exp]
3.46 0.9767
AT1G31920 Tetratricopeptide repeat (TPR)... Potri.001G135400
[exp]
4.00 0.9641
AT5G57030 LUT2 LUTEIN DEFICIENT 2, Lycopene b... Potri.006G147300
[exp]
4.00 0.9718
AT4G01690 PPOX, HEMG1, PP... Flavin containing amine oxidor... Potri.002G186300
[exp]
5.47 0.9484
AT3G23760 unknown protein Potri.018G096056
[exp]
6.48 0.9566
AT3G56630 CYP94D2 "cytochrome P450, family 94, s... Potri.001G277305
[exp]
6.63 0.9511
AT2G29150 NAD(P)-binding Rossmann-fold s... Potri.005G039300
[exp]
8.24 0.9356
AT5G44600 S-adenosyl-L-methionine-depend... Potri.001G073000
[exp]
8.48 0.9645

Potri.008G173900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.