Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23920 876 / 0 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT4G17090 614 / 0 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT4G15210 432 / 2e-146 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT4G00490 431 / 1e-145 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT2G32290 412 / 7e-138 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT5G55700 386 / 3e-128 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT2G45880 375 / 8e-122 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G45300 313 / 4e-98 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT5G18670 288 / 5e-90 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G062900 [exp] 1075 / 0 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.001G148900 [exp] 619 / 0 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G085500 [exp] 608 / 0 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G143500 [exp] 487 / 7e-167 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.001G087600 [exp] 473 / 8e-162 AT3G23920 459 / 3e-156 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.014G083800 [exp] 428 / 2e-144 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.017G040800 [exp] 423 / 9e-142 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.002G159300 [exp] 397 / 2e-130 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.014G083700 [exp] 394 / 2e-129 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004396 [exp] 853 / 0 AT3G23920 848 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10023700 [exp] 811 / 0 AT3G23920 783 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10004398 [exp] 665 / 0 AT3G23920 649 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10001087 [exp] 602 / 0 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10011035 [exp] 590 / 0 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10023698 [exp] 567 / 0 AT3G23920 552 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10040134 [exp] 556 / 0 AT4G17090 735 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10003005 [exp] 539 / 0 AT4G17090 709 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10039701 [exp] 436 / 7e-146 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039702 [exp] 427 / 2e-144 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01373 [poplar] [flax] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Potri.008G174100.1 pacid=42808748 polypeptide=Potri.008G174100.1.p locus=Potri.008G174100 ID=Potri.008G174100.1.v4.1 annot-version=v4.1 ATGAACATAACACATCAGATCGGAGCTTTAGCCGGAACACCAATCCAAGCAGAATCAATAACCAACACTGAAACCACCGCAACAGCCAGCGCAGCGGCGG TGTGGAAAACTCCAATACCAAACATCCGATGCAAAATCACAAAACCAGACACCGCCGAGCAAAAATCACAACCAACAAGCCCTTGTAGGTCTCCAATACT AAGCGCCGGCAACGGCATCCGTCCGGATCTATCAGTGGCATGCCGAGCATTCGCAACAGAAACAATGGACTTGGTGAGTTTTGACGAGACAACAGAACAA GAGAAGACGTATAAAGAGGTGAACACGGTGAAGGAGAAAGGAGTGCCAGTTTACGTGATGATGCCGTTGGATAGTGTGACGATGAGTAACACGTTGAATA GAAGGAAAGCGATGAATGCAAGTTTACAGGCGTTGAAGAGCGCAGGCGTGGAAGGGGTGATGATGGATGTCTGGTGGGGATTAGTGGAGAGAGATACGCC TGGTGTGTATAATTGGGGAGGGTATACCGAACTCTTAGAAATGGCTAAACGACATGGTCTTAAGGTTCAGGCTGTGATGTCGTTTCATCAGTGTGGCGGC AACGTTGGTGATTCTTGCACGGTTCCATTGCCAAAGTGGGTTGTGGAGGAGGTTCATAAAGATCAAGACCTTGCATACACTGATCAGTGGGGGAGGAGGA ATTATGAGTATGTATCACTTGGGTGCGATAGCATTCCAGTTCTCAAGGGGAGGACACCTGTGCAATGTTACTCTGATTTTATGCGGGCCTTTAGGGACAA CTTCAAACACCTTCTTGGTGACACCATTGTGGAAATCCAAGTGGGAATGGGTCCAGCAGGTGAGCTCCGCTATCCTTCGTACCCGGAGCAGAATGGAACT TGGAGATTTCCTGGAATCGGAGCCTTCCAATGTTACGATAAGTATATGTTGAGTAGCTTGAAAGCAGCGGCGGAAGCTGCTGGTAAGCCAGAATGGGGTA GCACAGGCCCAACTGATGCTGGTGAGTACAACAACTGGCCGGAAGACACCCGGTTTTTCAGAAAAGAAGGTGGTGGCTGGACTTGTCCCTATGGTGAATT CTTCCTCTCTTGGTACTCGCAGATGCTCTTAGACCACGCTGAGAGAATATTGTCGTCAGCGAAGGCTATCTATGAGAATACTGGTGTAAAGATCTCAGTG AAGATTGCAGGAATTCATTGGCACTATGGAACCCGGTCTCATGCCCCAGAGCTCACAGCAGGATATTATAACACGAGAAACAGAGATGGTTACCTTCCTA TTGCTCAAATGTTAGCTCGGTATGGTGCTATATTCAATTTCACTTGCATAGAAATGCGTGACCATGAACAGCCACAGGATGCCCTTTGTGCCCCTGAGAA GCTTGTGAGGCAAGTGGCTTTAGCAACGCGAGAAGCAGAGGTTCCTCTTGCCGGGGAAAATGCACTGCCACGATATGATGAGAACGCACATGAGCAAATT TTGCAGGCGTCATCATTGAATATTGATGGAAACTCAAAAGACAGCGAGATGTGTGCTTTTACGTACTTGAGAATGAACCCTCACTTATTTCAACCAGATA ACTGGAGACGCTTCGTGGGATTTGTGAAGAAGATGAATGAAGTGAAGAGTCCTGACCGGTGTTTGGAGCAGGTTGAGAGGGAAGCGGAGCATTTTGTGCA TGTAAGTCGACCTTTAGTAAAGGAGGCGGCTGTGGCTCATATGCACTAG
AA sequence Show only first row Show all	>Potri.008G174100.1 pacid=42808748 polypeptide=Potri.008G174100.1.p locus=Potri.008G174100 ID=Potri.008G174100.1.v4.1 annot-version=v4.1 MNITHQIGALAGTPIQAESITNTETTATASAAAVWKTPIPNIRCKITKPDTAEQKSQPTSPCRSPILSAGNGIRPDLSVACRAFATETMDLVSFDETTEQ EKTYKEVNTVKEKGVPVYVMMPLDSVTMSNTLNRRKAMNASLQALKSAGVEGVMMDVWWGLVERDTPGVYNWGGYTELLEMAKRHGLKVQAVMSFHQCGG NVGDSCTVPLPKWVVEEVHKDQDLAYTDQWGRRNYEYVSLGCDSIPVLKGRTPVQCYSDFMRAFRDNFKHLLGDTIVEIQVGMGPAGELRYPSYPEQNGT WRFPGIGAFQCYDKYMLSSLKAAAEAAGKPEWGSTGPTDAGEYNNWPEDTRFFRKEGGGWTCPYGEFFLSWYSQMLLDHAERILSSAKAIYENTGVKISV KIAGIHWHYGTRSHAPELTAGYYNTRNRDGYLPIAQMLARYGAIFNFTCIEMRDHEQPQDALCAPEKLVRQVALATREAEVPLAGENALPRYDENAHEQI LQASSLNIDGNSKDSEMCAFTYLRMNPHLFQPDNWRRFVGFVKKMNEVKSPDRCLEQVEREAEHFVHVSRPLVKEAAVAHMH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Potri.008G174100 [exp]	0	1
					Potri.010G176250 [exp]	2.44	0.8283
AT3G24090			glutamine-fructose-6-phosphate...		Potri.019G054500 [exp]	3.87	0.8652
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.004G017666 [exp]	5.09	0.8408
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.004G017600 [exp]	9.16	0.8166
AT3G57810			Cysteine proteinases superfami...		Potri.010G234300 [exp]	12.96	0.8012
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.014G180600 [exp]	15.49	0.7746
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Potri.004G038000 [exp]	17.97	0.7731	NAC005
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Potri.002G082400 [exp]	18.57	0.8042
AT1G18210			Calcium-binding EF-hand family...		Potri.012G048200 [exp]	24.97	0.7736	Pt-CBL1.1
AT5G22390			Protein of unknown function (D...		Potri.004G201500 [exp]	27.33	0.7177

Compare expression of checked genes

Potri.008G174100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.