Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13540 78 / 3e-17 unknown protein AT3G23930 72 / 7e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G062600 [exp] 231 / 3e-76 AT4G13540 74 / 4e-16 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023697 [exp] 165 / 2e-50 AT4G13540 110 / 8e-30 unknown protein Lus10004393 [exp] 164 / 4e-50 AT4G13540 109 / 2e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G174400.1 pacid=42808227 polypeptide=Potri.008G174400.1.p locus=Potri.008G174400 ID=Potri.008G174400.1.v4.1 annot-version=v4.1 ATGCAATTCACACACCTTCCTTCTAACTCAAACCCCATTATGGATTGTTTAGGTGGTAAGAAAAAGAGCAAGAAGTGTGAGAAAGGTCTTAGAGGGCTCA CAGAGAAGGTATGGCTTTTCCAAGAAGAGATCCAAGCTATAATGTACGAGAGAGAGAAAGAGGCTAGAGCTTATGAGAGAGACATGATAGTTTTTGCATT TAAAAGAGCAGAATGGAAGCAAGAGAGAAAGAAGCTTAAGGAGGAAGTAAAGAGATTGAGAAAGGTAGTGGAAGAGAAAGATGACAGGATTAGAGTATTG GAAGAAAGGTCGATAGGAAGAGAAAGTGAAAAAAGGGAGGAGTTCTTGGGGACTACTAGCTTCCTTGTGGAGCAAATGAGGGAGGAGTTCTTGGGGACTA CTAGCTTCCTTGTGGAGCAAATGAGGGAGGAGAGAGTGTGGCGCGACGAGGCTGTGGATAAGTGGAAGAAGCTATATCTTGCCATTAAGGCCGAGCTTGA TGATCTCATTCAGAAGACTCACCATGGAGATGGCTTGTACTGGAGAGCAGAGGAAGAAGAAATGATTGAGGAGCTGAAGATGGAAGTGAAGGCCAAGGAA GGATGTATAGAGGAGCTGAAAGCACAATTAGCTTTAGCGAAGAAAGAAGAATACAATAGGGCAAGGGAGGTCGATATTCTGCGGCAGAGCTTGAAAATCA TGAGCAGTAGGAAGGCATCCAGCTTTGCTCTTAGCAAACCGAAGTTAGAACTTGTGAAACAGGCTACAAAAGCATAG
AA sequence Show only first row Show all	>Potri.008G174400.1 pacid=42808227 polypeptide=Potri.008G174400.1.p locus=Potri.008G174400 ID=Potri.008G174400.1.v4.1 annot-version=v4.1 MQFTHLPSNSNPIMDCLGGKKKSKKCEKGLRGLTEKVWLFQEEIQAIMYEREKEARAYERDMIVFAFKRAEWKQERKKLKEEVKRLRKVVEEKDDRIRVL EERSIGRESEKREEFLGTTSFLVEQMREEFLGTTSFLVEQMREERVWRDEAVDKWKKLYLAIKAELDDLIQKTHHGDGLYWRAEEEEMIEELKMEVKAKE GCIEELKAQLALAKKEEYNRAREVDILRQSLKIMSSRKASSFALSKPKLELVKQATKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13540			unknown protein		Potri.008G174400 [exp]	0	1
AT5G45480			Protein of unknown function (D...		Potri.006G013300 [exp]	11.48	0.8039
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024200 [exp]	12.68	0.8026
AT2G30370		EPFL6, CHAL	EPF1-like 6, CHALLAH, allergen...		Potri.013G155500 [exp]	13.85	0.8419
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Potri.005G147100 [exp]	14.00	0.7169	HAT22.2
AT5G10530			Concanavalin A-like lectin pro...		Potri.007G004400 [exp]	14.83	0.8066
AT4G00120	bHLH	IND1, GT140, bH...	INDEHISCENT, EMBRYO SAC DEVELO...		Potri.007G108000 [exp]	20.73	0.6746
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.001G058600 [exp]	21.63	0.8125
AT4G31980			unknown protein		Potri.013G146300 [exp]	22.91	0.8146
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Potri.011G139800 [exp]	23.36	0.7218	Pt-PSPK3.2
AT5G50335			unknown protein		Potri.012G094000 [exp]	26.15	0.7439

Compare expression of checked genes

Potri.008G174400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.