Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43900 2206 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT1G04160 2164 / 0 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT4G28710 2087 / 0 ATXIH, XIH MYOSIN XI H, Myosin family protein with Dil domain (.1) AT2G20290 1903 / 0 ATXIG, XIG MYOSIN XI G, myosin-like protein XIG (.1) AT5G20490 1901 / 0 XI-17, ATXIK, XIK MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) AT1G54560 1889 / 0 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT1G08730 1847 / 0 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT2G31900 1799 / 0 ATMYO5, PCR11, ATXIF, XIF MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) AT1G17580 1795 / 0 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT4G33200 1532 / 0 XI-15, ATXI-I, XI-I MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254300 [exp] 2368 / 0 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.006G145700 [exp] 1961 / 0 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.001G199200 [exp] 1939 / 0 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.013G043900 [exp] 1926 / 0 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.019G013800 [exp] 1922 / 0 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.001G233100 [exp] 1873 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.009G025300 [exp] 1872 / 0 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.006G220000 [exp] 1522 / 0 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Potri.002G041800 [exp] 1281 / 0 AT1G08730 1447 / 0.0 MYOSIN XI C, Myosin family protein with Dil domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022850 [exp] 2303 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10032597 [exp] 2049 / 0 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10023696 [exp] 1969 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10005521 [exp] 1919 / 0 AT1G54560 2686 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10021570 [exp] 1892 / 0 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10003315 [exp] 1877 / 0 AT5G20490 2479 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10017160 [exp] 1808 / 0 AT5G20490 2476 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10009791 [exp] 1407 / 0 AT1G04160 2103 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Lus10043153 [exp] 1405 / 0 AT5G43900 1250 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10038072 [exp] 1347 / 0 AT4G33200 1982 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00063 [poplar] [flax] Myosin_head Myosin head (motor domain) CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0010 [poplar] [flax] SH3 PF02736 [poplar] [flax] Myosin_N Myosin N-terminal SH3-like domain
Representative CDS sequence Show only first row Show all	>Potri.008G174500.2 pacid=42806004 polypeptide=Potri.008G174500.2.p locus=Potri.008G174500 ID=Potri.008G174500.2.v4.1 annot-version=v4.1 ATGGCTGCTCAAGTCAATTCAATGGTTGGATCTTTTGTTTGGGTGGAGGATCCTGAGGAAGCTTGGATGGATGGGGAAGTTTTGGAAGTTAATGGTGAAG AAATTACAGTAAACTGTGCATCAAGGAAGGCGGTTGTTGCTAAAGCATCTAATGTTTTTCCAAAGGATCCTGAATTTCCTCCATGTGGCGTGGATGATAT GACCAAGCTGGCATATTTGCATGAACCAGGGGTTTTGCAGAATCTTAGATGTAGATATGATATAAATGAAATATATACTTACACAGGAAATATATTGATT GCTGTGAACCCTTTCCGAAGACTTCCTCATTTATATGATAATCATATGATGGAACAGTATAAAGGGGCAACCATTGGTGAGTTGAGCCCACATCCTTTTG CCGTGGCAGATTCAGCATACAGACAGATGATTAATGAAGGAATAAGCCAGTCAATTTTGGTTAGTGGGGAAAGTGGAGCTGGTAAAACAGAGAGTACAAA AATGCTCATGCGTTATTTGGCCTACATGGGAGGGAGGGCTGCAGCTGAGGGACGGTCTGTGGAGCAGCAAGTTTTAGAGTCCAATCCTGTTCTGGAAGCA TTTGGTAATGCAAAGACACTGAGAAATAATAATTCAAGCCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGATCAAAGTGGGAGGATTTCAGGAGCTGCTA TTAGAACTTATTTACTGGAACGCTCCCGTGTTTGCCAAGTGTCTGATGCTGAGAGAAACTATCATTGTTTTTACATGCTCTGTGCTGCGCCAGAAGAGGT TATAGAGAAGTACAAATTGGGAAATCCTAGAACATTTCATTATCTTAATCAATCAAATTTCTATGATCTGGATGGAGTGAATGAGTCCGAGGAGTATCTG GCGACCAGAAGAGCTATGGATATTGTTGGGATAAATGCTAATGAACAGGATGCAATATTCCGAGTTGTGGCTGCAATACTACATCTAGGCAATGTGGAGT TTGCTAAGGGAAATGAAATAGATTCTTCTGAACCTAAGGATGATAAGTCTCAGTTTCATCTCAAGACAGCAGCTGAACTTTTGATGTGCAATGAGAAGTC TCTTGAAAACTCATTATGCAAGCGTGTGATAGTAACTCGTGATGAGAGCATAACAAAATGGCTTGATCCAGATGCTGCAACTGTCAATAGAGATACTTTG GCCAAAATTGTTTATTCGAGATTATTTGACTGGATTGTAAGCACGATAAACAACTCTATTGGTCAAGATCCTAATTCCAAATCTTTAATTGGAGTTCTGG ATATATATGGATTTGAGAGTTTCAAGACAAACAGTTTTGAGCAATTTTGTATAAACTTGACCAATGAAAAGCTGCAGCAACACTTCAACCAGCATGTCTT CAAGGCGGAGCAAGAAGAATATACAAAGGAAGAAATTGATTGGAGTTACATAGAATTCATTGATAACCAGGATATTCTTGATCTGATTGAGAAGAAACCT GGTGGCATCATTGCTCTGCTTGACGAAGCTTGTATGTTTCCTAGATCAACACATGAAACATTTGCAGAAAAGCTTTATCAGACTTTCAAAGACCACAAAC GTTTTAACAAACCTAAGTTAGCTCGCAGTGACTTCACCATTTGTCATTATGCTGGAGATGTGACATATCAAACTGAACATTTTCTGGATAAGAACAAGGA TTATGTTGTTGCAGAGCATCAATCTCTTCTCAGTGAGTCCATGTGCTCCTTTGTTTCAGGCCTGTTCCCACCATTGCCTGAGGAATCTGCCAAATCATCA AAGTTCTCATCAATAGGTTCTAGGTGTAAGCAACAACTACAAGCATTGCTTGAAACACTGAGTGCTACTGAGCCACATTACATTCGTTGTGTAAAACCGA ATAATGCTCTAAAGCCATCCATCTTTGAGAATAATAATGTTTTACAACAGCTGTGTTGTGGGGGAGTGATGGAAGCAATTAGGATTAGCTGTGCTGGATA TCCCACCAGGAAGACTTTTGATGAATTTGTTCGTCGTTTTGCCATTCTGGCACCAGATGTGCTGCATGGCGGCTGCGATGAGGTTAGTGCTTGCAAGATG CTTCTAGAGAAGGTGAACCTCAAAGGTTATCAGATTGGCAAAACAAAAGTTTTTCTTAGAGCTGGTCAGATGGCGGAGCTAGATGCTCATCGAAGTGAGC TGTTAGGAAGATCAGCAAGCATCATCCAGAGGAAAGTTCGATCGTATTTTTGTCGCAAAAGCTTTATCTTATTGCGACAGTCTGCCATTCATATCCAAAC TTTGTGTAGAGCTGAAGTAGCACGCAATAGGTTTGAATGCCTGAGAAGAGAAGCTGCTTGTTTGAAAATCCAGAAATATTCTCGCAGGTACCTTGCAAGT AAAGCATACAACAATTTGTGCTTCTCAGCTGTCTCCATTCAGTCATGCATGCGTGGAATGGCTGCTCGTAATGAGCTTTGTTTCAGGAAGCAGATGAGAG CTGTGATTGTCATCCAGAGTCAATGCCGAAAACATTCGGCCCAACTTCATTATTTGAGGTTAAAACGAGCAGCAATTGCCACTCAATGTGCCTGGAGAGG GCGGGTTGCTCGTAAAGAATTACGGAAGCTTAAAATGGCTGCTAAGGAGACTGGTGCTCTCCAAGCTGCAAAAAGTAAACTGGAAAAGGAAGTTGAAGAA CTCACCTGGCGTCTGCAGCTGGAGAAACGAATGAGGGCTGACCTAGAGGAATCCAAAACACAGGAAAATGCTAAATTACGCACAACATTGCAAGAAATGC AGCTTGAATTCCAAGAATCTAAAGCTCTGTTAATCAAGGAACGAGAGTCTATAAAGAAAGAAGCTGAAAAAGTCCCAACCATACAGGAAGTCCCAGTTAT TGATAATGAACTGGTGAATAAACTTACTGCTGAAAATGAAATGCTCAAGGCTATGGTAAGCTCACTGGAAAAGAGAATTGATGAAACAGAGAAGAAATAT GAAGAGACGAGTAAGCTTAGTGAAGAGCATCTGAAGCAGGCTTTGGATGCAGAGTCAAAGATAATTGAGCTGAAAACAGCCATGCAGAGGCTTGAAGAAA AACTCTCTGACATGGAAGCTGAGGACCAAGTTCTGCAGCACCAAGCACTGTTCAGTTCATCTTCAAGAAAAATGTCAGAACATTTGGAAATTACCTCTCA GCATCTAGAAAATGGTCATCATGAACCACCAACTCCATCTAAAAGGCTTGGCACAGATGCTGACAAAAAAATGAGGAAATCTCAGATTGAACGGCTACAT GAGAGTGTAGATGCTCTAATAAAATGCGTGGAGCAAAATCCTGGGTTTAGTCAAGGAAAACCAGTTGGAGCATTTACCATTTACAGATGCCTTGTCCAGT GGAGATCGTTTGAAGCAGAAAAAACCAGTGTATTTGATCGTCTTATTCAGATGATTGGTTCTGCAATAGAGAACCAGGATGACAATAATCATATGGCTTA CTGGTTATCTAATACCTCAATGCTGCTGTTCTTACTTCAACGGACTTTAAAAGACAGTGGTGCCAATTCAAATCCACCTCCTCCAACATCATTTTTTGGA AGGATGGCCCAAGGTTTCCGTTCTTCACCTTCTTCAGCCAATCTTAGAGTTGGTAGAGATATACAGATGGTTGAGGCTAAGTATCCAGCTTTGCTTTTTA AACAGCAGTTGACAGCATATGTGGAGACGATATATGGCATTGTTCGGGATAATTTTAAAAAGGATTTATCACCTCTTCTTTCATCATGTATCCAGGCACC AAGGGCATCAAGGGGAACTGCTTTAAAATCATCTCTGTCATTTGGCCATAATACGCCAGCTGATAGCTGGCGCAGCATTGTCAATAGTCTTGATGGGCTG CTATGCACATTGAAAGAAAATTTTGTGCCTCCAATTTTTGTGCAGAAGATATTTACTCAAATTTTCTCATACATTAATGTGCAGCTGTTTAATAGCCTTC TGCTTCGTCGAGAGTGCTGCACGTTCAGCAATGGGGAATATGTGAAGGCTGGGTTAGCTGAATTAGAATTATGGTGTGGCCAAGCAAAAGAAGAGTATGT TGGAGCATCCTGGGATGAACTTAAAAACACTAGGCAAGCTGTTGGATTCTTGGTTATACACCAGAAATCGAGAATTTCCTATGATGAAATTACCAATGAC CTTTGCCCGGTCCTGAGTGTTCAACAGCTATACAGAGTATGCACTTTATACTGGGATGACGACTACAATACTCGAAGTGTATCTCCTGATGTGATTTCCA GCATGAAAACACTAGCAAACGACTCAAATGATGATGATAGCAACTCATTCTTGATAGATGACAATTCAAGCATTCCTTTCTCAGTTGATGACTTATCTGG CTCCTTTCACGAGAAGGATTTCTCAGATGTAAAACCTGCAGCGGATCTTCTGGAGAATCCAGCCTTCCAATTTTTACAGGATTAA
AA sequence Show only first row Show all	>Potri.008G174500.2 pacid=42806004 polypeptide=Potri.008G174500.2.p locus=Potri.008G174500 ID=Potri.008G174500.2.v4.1 annot-version=v4.1 MAAQVNSMVGSFVWVEDPEEAWMDGEVLEVNGEEITVNCASRKAVVAKASNVFPKDPEFPPCGVDDMTKLAYLHEPGVLQNLRCRYDINEIYTYTGNILI AVNPFRRLPHLYDNHMMEQYKGATIGELSPHPFAVADSAYRQMINEGISQSILVSGESGAGKTESTKMLMRYLAYMGGRAAAEGRSVEQQVLESNPVLEA FGNAKTLRNNNSSRFGKFVEIQFDQSGRISGAAIRTYLLERSRVCQVSDAERNYHCFYMLCAAPEEVIEKYKLGNPRTFHYLNQSNFYDLDGVNESEEYL ATRRAMDIVGINANEQDAIFRVVAAILHLGNVEFAKGNEIDSSEPKDDKSQFHLKTAAELLMCNEKSLENSLCKRVIVTRDESITKWLDPDAATVNRDTL AKIVYSRLFDWIVSTINNSIGQDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKAEQEEYTKEEIDWSYIEFIDNQDILDLIEKKP GGIIALLDEACMFPRSTHETFAEKLYQTFKDHKRFNKPKLARSDFTICHYAGDVTYQTEHFLDKNKDYVVAEHQSLLSESMCSFVSGLFPPLPEESAKSS KFSSIGSRCKQQLQALLETLSATEPHYIRCVKPNNALKPSIFENNNVLQQLCCGGVMEAIRISCAGYPTRKTFDEFVRRFAILAPDVLHGGCDEVSACKM LLEKVNLKGYQIGKTKVFLRAGQMAELDAHRSELLGRSASIIQRKVRSYFCRKSFILLRQSAIHIQTLCRAEVARNRFECLRREAACLKIQKYSRRYLAS KAYNNLCFSAVSIQSCMRGMAARNELCFRKQMRAVIVIQSQCRKHSAQLHYLRLKRAAIATQCAWRGRVARKELRKLKMAAKETGALQAAKSKLEKEVEE LTWRLQLEKRMRADLEESKTQENAKLRTTLQEMQLEFQESKALLIKERESIKKEAEKVPTIQEVPVIDNELVNKLTAENEMLKAMVSSLEKRIDETEKKY EETSKLSEEHLKQALDAESKIIELKTAMQRLEEKLSDMEAEDQVLQHQALFSSSSRKMSEHLEITSQHLENGHHEPPTPSKRLGTDADKKMRKSQIERLH ESVDALIKCVEQNPGFSQGKPVGAFTIYRCLVQWRSFEAEKTSVFDRLIQMIGSAIENQDDNNHMAYWLSNTSMLLFLLQRTLKDSGANSNPPPPTSFFG RMAQGFRSSPSSANLRVGRDIQMVEAKYPALLFKQQLTAYVETIYGIVRDNFKKDLSPLLSSCIQAPRASRGTALKSSLSFGHNTPADSWRSIVNSLDGL LCTLKENFVPPIFVQKIFTQIFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCGQAKEEYVGASWDELKNTRQAVGFLVIHQKSRISYDEITND LCPVLSVQQLYRVCTLYWDDDYNTRSVSPDVISSMKTLANDSNDDDSNSFLIDDNSSIPFSVDDLSGSFHEKDFSDVKPAADLLENPAFQFLQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Potri.008G174500 [exp]	0	1
AT1G63640			P-loop nucleoside triphosphate...		Potri.001G104000 [exp]	2.44	0.7719
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Potri.002G254300 [exp]	4.69	0.8317	XIB.1
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.016G138000 [exp]	9.79	0.7672
AT2G38440		ITB1, DIS3, SCA...	IRREGULAR TRICHOME BRANCH1, S...		Potri.006G105800 [exp]	24.49	0.7193	WAVE4.1
AT2G29890		ATVLN1, VLN1	villin 1, villin-like 1 (.1.2....		Potri.009G045000 [exp]	29.86	0.7538	VLN1.1
AT5G47490			RGPR-related (.1)		Potri.003G077100 [exp]	31.74	0.7137
					Potri.013G034600 [exp]	32.12	0.7259
AT2G21630			Sec23/Sec24 protein transport ...		Potri.014G178500 [exp]	34.72	0.7315
AT2G46560			transducin family protein / WD...		Potri.002G173300 [exp]	37.41	0.7295
AT1G79910			Regulator of Vps4 activity in ...		Potri.001G181300 [exp]	41.29	0.6796

Compare expression of checked genes

Potri.008G174500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.