Plant FIBer expression Database

Potri.008G174800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G23980 407 / 1e-131 KOS1, BLI KOLD SENSITIV 1, BLISTER (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G062000
[exp]
931 / 0 AT3G23980 389 / 2e-124 KOLD SENSITIV 1, BLISTER (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023694
[exp]
538 / 0 AT3G23980 447 / 1e-146 KOLD SENSITIV 1, BLISTER (.1)
Lus10035243
[exp]
525 / 4e-176 AT3G23980 428 / 6e-139 KOLD SENSITIV 1, BLISTER (.1)
PFAM info
Representative CDS sequence
>Potri.008G174800.1 pacid=42806866 polypeptide=Potri.008G174800.1.p locus=Potri.008G174800 ID=Potri.008G174800.1.v4.1 annot-version=v4.1
ATGGCGTCGGCTCAGGTGTTGCCGAGCTCACGGAAACTGGAGCATCTCGAAGCAGGAAAGCGACGGTTGGAGGAGTTCCGCAAGAAAAAGGCAGCAGAGC
GAGCCAAGAAAGTTGCATCCACCAACCAGCCTCATGCTTTGGATGTGAGCCTAGATCAGAAGCAATCATTAGAGACTGAACACGTACAGCTAACAGATTC
AGATGGAGTTGGTATGTCTGATGGACCTGGCAGAAATGTCGAACCCACTGGTGTATCTATGAACAATGGCAACCCAATTGATATTACAGAGAGAGTTGAA
AAAAGTTCTTCACAAAATGCAGATCCTAATATCCCTTCTTTGAGTGCATATAGTACATTTTTCTCAGGTATAACACAGAAACACACAAATAATTATGATT
CTAACAGGCATGATGCTTCAGGATTTGTTGGATCACCCAATGTTAGGTATGGCCAAGAGACAGAAAAAATGAACAATGACTCTGGATTATATTCAAGGAG
CAAAGAGGAATCTCCATATGGGATTTCATCTGACAATTATATTGCTAGTAGTTTTCATGGCATATCTAGTGAATCTAGCCTTTATGGAAGGGAATTGTTC
CAATCAAAAGTAGATAACACCTCTTTAAAGGATTCCGTGGTTATAAATGATAGTTCTCGTTTTCCTACTTCACTTCCAAGTTCTGCCAGCTTTGAACAGC
AAGCCTTTAAGCCCAGTTATAGTAGCACCCTTGCCAATGCTGCTTTGCAGACATCTGAATCCACAGGTTTCAAATCAGATGCCAAGATCTCCTCGAATCA
TGTGCCTCAATATTCAGTCACATCTGAAAGTAATAACAGGAGATCTCGTCCATCTTTCCTTGACTCTCTTAACGTGTCTAGATCGTCTTCTCAGAGTTCT
TTTCGACATTCTGAACCAGAGAAGTCATTTATAATCAATACTTCAAAATCCAATGGCATTGATGCTCTAGGATCATCTGCTTTCCAGAAGCTGCCAGTGG
AGACTGAAACTGCCAGGATTTTTTCAGAGTTAATGCCTTCAAGTATGCCTAGTTCATTTGATCATGCAACACCATTTTCAGTTTCGTCCACTAATGGGGT
CACTAATGCTAATGAGAACAGTATGGAGAGAAATCATGAGTTTTATTTGCCCAAGCAAAATGAAGATTTTTCTGGTCTGGAACAGCATATTGAAGACTTG
ACGCAAGAAAAATTCTCTTTGCAACGAGCTCTTGAAGCTTCACGCGCTTTAGCAGTGTCCTTGGCTGCTGAAAATTCATCGTTGACAGATAGCTATAACC
AACAGAGAGGTGTTGTCAACCAACTGAAATCTGATATGGAGCAGTTACAGGAAGAAATCAAGGCCCATTTGGTGGAACTTGAGTCTGCCAAAATTGCATG
TGCAAATGCACAGCTTGAGTGCAATGCTGCTGATGAACGAGCTAAGCTACTGGCTTCTGAGGTTATTGGTTTGGAAGAGAAGGCACTCAGACTAAGATCT
AGTGAGCTAAAGCTGGAGAGGCAATTGGAGAGCTCACAGACTGAGATAACTTCTTACAAAAAGAAAATGTCCAGCCTGGAGAAGGATCGTCAGGATCTGC
AGTCGACAATTGATGCTCTCCAAGAAGAGAAGAAACTATTGCAATCCAAGCTTCATAAAGCTTCTGTAACCGAAAAGTCTGCTTGTGTTAGCAGGAGTGC
AGAGAAAAAAAATGTAGCAACATCCACGGAAGATTTAGGTGATATCCCAGAGACTTCCGGCCAGGAAACCCATGACGCTGCATCATTTCCTGGAAGTGAT
GCCTCTGATTTTCTCAACCTACCTGGCAGTGGTCAGTTGAATCTTGAAGCTTCATCTGTGTATATTCCACCAGATCAAATGAGAATGATTCAAAACATTA
ACACAATAATATCCGAGCTTGCATTGGAAAAAGAGTTGATGCAAGCTTTGACATCCGAGTCATCTCAGTGCTCCAAGCTAAAGGATTTGAACGATGAATT
GTCGCGTAAACTTGAGATTCAAACTCAAAGATTAGAGCTTTTGACTGCTCAAAGTATGGCAAGTGAAAATATCCCAGCAAGGTTACCAGATTCACATACT
GTGCAAGACAGCACTGCATATGCAGATGAAGGTGATGAGGTGGTGGAAAGGGTTTTAGGGTGGATTATGAAGCTCTTCCCTGGAGGACCATCCAGACGAA
GAACAAGCAAGCTGCTTTGA
AA sequence
>Potri.008G174800.1 pacid=42806866 polypeptide=Potri.008G174800.1.p locus=Potri.008G174800 ID=Potri.008G174800.1.v4.1 annot-version=v4.1
MASAQVLPSSRKLEHLEAGKRRLEEFRKKKAAERAKKVASTNQPHALDVSLDQKQSLETEHVQLTDSDGVGMSDGPGRNVEPTGVSMNNGNPIDITERVE
KSSSQNADPNIPSLSAYSTFFSGITQKHTNNYDSNRHDASGFVGSPNVRYGQETEKMNNDSGLYSRSKEESPYGISSDNYIASSFHGISSESSLYGRELF
QSKVDNTSLKDSVVINDSSRFPTSLPSSASFEQQAFKPSYSSTLANAALQTSESTGFKSDAKISSNHVPQYSVTSESNNRRSRPSFLDSLNVSRSSSQSS
FRHSEPEKSFIINTSKSNGIDALGSSAFQKLPVETETARIFSELMPSSMPSSFDHATPFSVSSTNGVTNANENSMERNHEFYLPKQNEDFSGLEQHIEDL
TQEKFSLQRALEASRALAVSLAAENSSLTDSYNQQRGVVNQLKSDMEQLQEEIKAHLVELESAKIACANAQLECNAADERAKLLASEVIGLEEKALRLRS
SELKLERQLESSQTEITSYKKKMSSLEKDRQDLQSTIDALQEEKKLLQSKLHKASVTEKSACVSRSAEKKNVATSTEDLGDIPETSGQETHDAASFPGSD
ASDFLNLPGSGQLNLEASSVYIPPDQMRMIQNINTIISELALEKELMQALTSESSQCSKLKDLNDELSRKLEIQTQRLELLTAQSMASENIPARLPDSHT
VQDSTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G23980 KOS1, BLI KOLD SENSITIV 1, BLISTER (.1) Potri.008G174800
[exp]
0 1
AT3G10380 SEC8, ATSEC8 subunit of exocyst complex 8 (... Potri.008G035300
[exp]
1.73 0.8250
AT1G10130 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE C... Potri.014G014700
[exp]
7.07 0.7965 Pt-ECA3.3
AT1G20760 Calcium-binding EF hand family... Potri.002G008600
[exp]
10.24 0.7530
AT5G06120 ARM repeat superfamily protein... Potri.003G189500
[exp]
12.72 0.7635
AT5G27970 ARM repeat superfamily protein... Potri.013G035100
[exp]
17.43 0.7331
AT1G12470 zinc ion binding (.1) Potri.013G147600
[exp]
21.63 0.7439
AT3G11130 Clathrin, heavy chain (.1) Potri.001G278800
[exp]
22.31 0.7742
AT5G11040 AtTRS120 TRS120 (.1) Potri.006G259500
[exp]
25.25 0.7468
AT2G45670 calcineurin B subunit-related ... Potri.014G074300
[exp]
25.41 0.7088
AT2G26890 KAM2, GRV2 KATAMARI2, GRAVITROPISM DEFECT... Potri.018G072600
[exp]
26.26 0.7384

Potri.008G174800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.