Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62480 66 / 4e-14 GST14B, ATGSTU9 GLUTATHIONE S-TRANSFERASE 14B, GLUTATHIONE S-TRANSFERASE 14, glutathione S-transferase tau 9 (.1.2) AT2G29420 63 / 4e-13 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) AT1G27130 53 / 3e-09 GST12, ATGSTU13 GLUTATHIONE S-TRANSFERASE 12, glutathione S-transferase tau 13 (.1) AT1G69920 53 / 4e-09 ATGSTU12 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 12, glutathione S-transferase TAU 12 (.1) AT2G29480 49 / 5e-08 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT1G10370 49 / 5e-08 GST30B, ATGSTU17, ERD9 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) AT1G78380 49 / 8e-08 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) AT1G27140 45 / 1e-06 GST13, ATGSTU14 GLUTATHIONE S-TRANSFERASE 13, glutathione S-transferase tau 14 (.1) AT1G78320 45 / 2e-06 ATGSTU23 glutathione S-transferase TAU 23 (.1) AT1G69930 44 / 4e-06 ATGSTU11 glutathione S-transferase TAU 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G061401 [exp] 125 / 4e-38 AT3G09270 113 / 7e-32 glutathione S-transferase TAU 8 (.1) Potri.002G254000 [exp] 128 / 5e-38 AT2G29420 167 / 1e-51 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061200 [exp] 125 / 4e-37 AT3G09270 202 / 8e-66 glutathione S-transferase TAU 8 (.1) Potri.008G175100 [exp] 114 / 7e-33 AT2G29420 169 / 1e-52 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.008G174900 [exp] 111 / 2e-31 AT2G29420 184 / 1e-58 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061600 [exp] 110 / 4e-31 AT2G29420 172 / 7e-54 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061700 [exp] 108 / 1e-30 AT2G29420 172 / 1e-53 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061301 [exp] 108 / 2e-30 AT2G29420 202 / 9e-66 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.008G175000 [exp] 107 / 5e-30 AT2G29420 177 / 7e-56 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035241 [exp] 87 / 3e-22 AT2G29420 188 / 5e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10001491 [exp] 79 / 6e-19 AT3G09270 185 / 5e-59 glutathione S-transferase TAU 8 (.1) Lus10007897 [exp] 74 / 7e-17 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10041654 [exp] 71 / 9e-16 AT2G29420 175 / 1e-54 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016471 [exp] 70 / 2e-15 AT2G29420 234 / 8e-78 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040761 [exp] 62 / 1e-12 AT2G29420 233 / 1e-77 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10021103 [exp] 59 / 2e-11 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1) Lus10013282 [exp] 57 / 8e-11 AT1G10370 229 / 2e-76 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10030805 [exp] 57 / 9e-11 AT1G10370 308 / 4e-107 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10007896 [exp] 57 / 1e-10 AT2G29490 171 / 2e-53 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [poplar] [flax] GST_C PF00043 [poplar] [flax] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G175050.1 pacid=42808674 polypeptide=Potri.008G175050.1.p locus=Potri.008G175050 ID=Potri.008G175050.1.v4.1 annot-version=v4.1 ATGATGAGTTTCTTCACGTATGTTGGAGAGCAACAGGAAAAGGCAATAAACGACAACCTCCAGACCTTGAGAATCATAGAAGAGCATGGACTAGGAGAGC AAAAATTTCTTAGTGGAGACAGAATTGGACTTGTAGATATTGCCTTGGGATGGATCATTCATACATTAGCAGCGATGGAGGAGATTGTTGGCGTCAAGTT TGTTCAAGCTGATACATTTCCTCTCTTGCATGCGTGGATGAAGAATTTTAGGGAAATTCCTGTAATTAAAGACAATCTCCCGAGTCATGATCAAATCTTG GACTACTTCAAAGGAAGGAGAGAGATGTTCGTCAAATCACCTCATGCTTGCCACCATCACCATTAG
AA sequence Show only first row Show all	>Potri.008G175050.1 pacid=42808674 polypeptide=Potri.008G175050.1.p locus=Potri.008G175050 ID=Potri.008G175050.1.v4.1 annot-version=v4.1 MMSFFTYVGEQQEKAINDNLQTLRIIEEHGLGEQKFLSGDRIGLVDIALGWIIHTLAAMEEIVGVKFVQADTFPLLHAWMKNFREIPVIKDNLPSHDQIL DYFKGRREMFVKSPHACHHHH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62480		GST14B, ATGSTU9	GLUTATHIONE S-TRANSFERASE 14B,...		Potri.008G175050 [exp]	0	1
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134200 [exp]	7.07	0.8161
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025650 [exp]	9.48	0.7848
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024800 [exp]	18.00	0.7501
AT1G12880		ATNUDT12	nudix hydrolase homolog 12 (.1...		Potri.003G161100 [exp]	20.92	0.7643
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Potri.008G197500 [exp]	25.80	0.7045
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.006G061000 [exp]	36.05	0.7202
AT1G11330			S-locus lectin protein kinase ...		Potri.004G027400 [exp]	38.15	0.7149
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.002G226600 [exp]	48.83	0.6870	NFR1.1
AT2G24580			FAD-dependent oxidoreductase f...		Potri.018G008700 [exp]	54.00	0.7468
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014636 [exp]	65.89	0.7166

Compare expression of checked genes

Potri.008G175050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.