Plant FIBer expression Database

Potri.008G175301 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67400 422 / 9e-151 ELMO/CED-12 family protein (.1)
AT2G44770 326 / 4e-113 ELMO/CED-12 family protein (.1)
AT3G60260 317 / 2e-109 ELMO/CED-12 family protein (.1.2.3.4)
AT1G03620 272 / 1e-91 ELMO/CED-12 family protein (.1)
AT3G03610 268 / 1e-89 ELMO/CED-12 family protein (.1)
AT3G43400 231 / 1e-76 ELMO/CED-12 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G060700
[exp]
514 / 0 AT1G67400 419 / 1e-149 ELMO/CED-12 family protein (.1)
Potri.014G049800
[exp]
323 / 1e-111 AT3G60260 434 / 1e-155 ELMO/CED-12 family protein (.1.2.3.4)
Potri.002G138700
[exp]
320 / 9e-111 AT3G60260 459 / 8e-166 ELMO/CED-12 family protein (.1.2.3.4)
Potri.013G136200
[exp]
241 / 1e-78 AT1G03620 322 / 1e-110 ELMO/CED-12 family protein (.1)
Potri.013G069000
[exp]
238 / 8e-78 AT3G03610 441 / 6e-157 ELMO/CED-12 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037017
[exp]
425 / 5e-152 AT1G67400 386 / 2e-136 ELMO/CED-12 family protein (.1)
Lus10015790
[exp]
418 / 3e-149 AT1G67400 385 / 4e-136 ELMO/CED-12 family protein (.1)
Lus10024285
[exp]
329 / 4e-114 AT2G44770 454 / 1e-163 ELMO/CED-12 family protein (.1)
Lus10003841
[exp]
283 / 9e-94 AT2G44770 407 / 2e-142 ELMO/CED-12 family protein (.1)
Lus10039805
[exp]
256 / 9e-86 AT1G03620 327 / 3e-114 ELMO/CED-12 family protein (.1)
Lus10018574
[exp]
254 / 1e-84 AT1G03620 328 / 7e-114 ELMO/CED-12 family protein (.1)
Lus10009523
[exp]
248 / 1e-81 AT3G03610 429 / 4e-152 ELMO/CED-12 family protein (.1)
Lus10020344
[exp]
244 / 3e-80 AT3G03610 428 / 1e-151 ELMO/CED-12 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04727 ELMO_CED12 ELMO/CED-12 family
Representative CDS sequence
>Potri.008G175301.1 pacid=42806640 polypeptide=Potri.008G175301.1.p locus=Potri.008G175301 ID=Potri.008G175301.1.v4.1 annot-version=v4.1
ATGAGCGTGGTTAGGAGTGAGGGCAGCTGCGTAGCCATCCGTAATCTCTCCCCTTCAACATCCATCAACCGATCATGCGCTCACGGTTCTGCTTCTTCAG
ATGATGATGCAACTTGTGGGACACCTACTTGGATCGGTAAGGGCCTCACCTGTGTTTGCTTCAAGCGAAAGGGAGCATATGAACGAATTTGCATTAACTT
GACCCCTCGACAGGAAGAAAGATTCAAAAGGTTGAAGCATAGAATGAAGGTTTATTTTGATGCTTCCAGACCAGATCACCAGGATGCTTTGAGAGCTCTA
TGGTCTGCCACGTATCCTGATCAGGAACTAAATGGATTGATATCTGATCAATGGAAAGAAATGGGATGGCAGGGAAGAGATCCATCTACTGATTTCAGAG
GAGCTGGATTCATTTCTTTGGAGAATCTATTATTCTTTGCAAAGACATTTTCAACATCATTTCAACATTTGCTAAAAAAGCAAGGAGGAAAAAGATCTGC
TTGGGAGTATCCATTTGCTGTTGCTGGTGTAAATATCACATTTATGATTATGCAGATGCTCGATCTCGATGCCTTGAAAACTAGAAGAACATTTGTAAGA
TCGGTTTTCTTACAGATGCTATCAGAAAATGAATGGGCATTTGACCTGCTCTATTGCGTGGCGTTTGTGGTCATGGACAAGCAATGGCTAGAGAGAAATG
CTACATACATGGAGTTCAATGATATCTTAAAATCTACTCGAGCTCAGGTGGAGAGAGAACTTCTAATGGATGATGTCTTGCGGATTGAAGACATGCCTTC
TTATAGCCTTCTTATTTAG
AA sequence
>Potri.008G175301.1 pacid=42806640 polypeptide=Potri.008G175301.1.p locus=Potri.008G175301 ID=Potri.008G175301.1.v4.1 annot-version=v4.1
MSVVRSEGSCVAIRNLSPSTSINRSCAHGSASSDDDATCGTPTWIGKGLTCVCFKRKGAYERICINLTPRQEERFKRLKHRMKVYFDASRPDHQDALRAL
WSATYPDQELNGLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQHLLKKQGGKRSAWEYPFAVAGVNITFMIMQMLDLDALKTRRTFVR
SVFLQMLSENEWAFDLLYCVAFVVMDKQWLERNATYMEFNDILKSTRAQVERELLMDDVLRIEDMPSYSLLI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G67400 ELMO/CED-12 family protein (.1... Potri.008G175301
[exp]
0 1
Potri.006G138400
[exp]
5.29 0.7222
AT3G08030 Protein of unknown function, D... Potri.009G058800
[exp]
10.63 0.7291
AT1G31850 S-adenosyl-L-methionine-depend... Potri.003G102400
[exp]
14.28 0.7272
AT1G12230 Aldolase superfamily protein (... Potri.001G120400
[exp]
21.56 0.7204
AT3G27580 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Prot... Potri.001G344600
[exp]
22.24 0.6784 PK7.1
AT2G17230 EXL5 EXORDIUM like 5 (.1) Potri.004G206600
[exp]
26.98 0.6859
AT5G28150 Plant protein of unknown funct... Potri.005G050900
[exp]
30.49 0.7044
AT1G70370 PG2 polygalacturonase 2 (.1.2) Potri.012G079200
[exp]
37.74 0.6588
AT3G48610 NPC6 non-specific phospholipase C6 ... Potri.015G097900
[exp]
41.35 0.6725
AT2G45730 eukaryotic initiation factor 3... Potri.005G238200
[exp]
45.95 0.6141

Potri.008G175301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.