Plant FIBer expression Database

Potri.008G175400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67420 1063 / 0 Zn-dependent exopeptidases superfamily protein (.1.2)
AT5G20660 175 / 6e-45 Zn-dependent exopeptidases superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G060500
[exp]
1445 / 0 AT1G67420 1085 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2)
Potri.008G039400
[exp]
185 / 4e-48 AT5G20660 1083 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2)
Potri.006G153300
[exp]
47 / 5e-05 AT5G19740 877 / 0.0 Peptidase M28 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037015
[exp]
1165 / 0 AT1G67420 1104 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2)
Lus10015792
[exp]
523 / 8e-173 AT1G67420 511 / 2e-168 Zn-dependent exopeptidases superfamily protein (.1.2)
Lus10009230
[exp]
190 / 7e-50 AT5G20660 1154 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2)
Lus10037997
[exp]
187 / 9e-49 AT5G20660 1157 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0035 Peptidase_MH PF04389 Peptidase_M28 Peptidase family M28
Representative CDS sequence
>Potri.008G175400.1 pacid=42807930 polypeptide=Potri.008G175400.1.p locus=Potri.008G175400 ID=Potri.008G175400.1.v4.1 annot-version=v4.1
ATGGCGTCGAGGCTGAGCTCAAGAGACGTATCTGGATTCAAATTCATCTTCTTTCTAGCGATTATCTACACTATCATTTCGCTTCTTGTTCACTCCGTAC
TTCACATGAAATTCATTACGCCCCTCTCGATCGACGCCCCTCTCGATCGCTTCTCCGAGGCCAGAGCCATCCACCATGTTGCAGTTCTAACCAAAGACGA
TCGTCAAGAAGGGCGTCCTGGATTAAGAAAAGCCGCGGCGTATATTAAAGAGCAGTTAGAAATGCTGAAGGAGAGAGCTGAATCCAATATCAGGATTGAG
GTTGAGGAGACCACTGTTAATGGTTCCTTCAATATGATATTTCTAGGCCACGGCATATCTTTTGCTTATAGAGACCATATAAATATTGTTGCCAGGATAT
CATCAGCTGATTTGCAAGAAACTGACCCATCTGTGTTAATTAATGGCCATTTTGATAGTCCTCTTGGTTCACCAGGAGCTGGTGATTGTGGTTCATGTGT
TGCATCAATGCTGGAATTAGCTAGAGTTACGGTAGAATCTGGCTGGATCCCCCCCCGGCCAATTATTTTTCTTTTTAATGGCGCAGAAGAACTTTTTATG
CTGGGTTCACATGGCTTCATGACGACACATAAATGGCGTGATTCAGTTGGAGCTTCTATAAATGTGGAAGCATCTGGGACTGCTGGTCCTGATTTAGTCT
GCCAATCTGGACCTGGGTCTTGGCCTTCTCAAGTATATGCAGAGTCTGCAGTATATCCCATGGCACATAGTGCTGCTCAGGACATCTTTCCTGTGATTCC
TGGAGATACAGATTACAGAATATTTTCCCAAGATCATGGGAACATTCCAAGCCTTGATATCATCTTTCTTCTTGGTGGTTATTACTACCATACATCCTAT
GATACATTGGACAAATTACTACCTGGGAGCATTCAAGCTCGTGGAGACAATTTGCTTAGCATACTCAAAGCCTTCACAAATTCTTCCAAGCTACAAAGTG
CTCGAGAAAGAGAATCTAAAGCCACAACCAATGACTACAAGGATGAGAGGGCTGTTTTCTTTGATTACTTATCATGGTTCCTTATTTTCTATTCAAGAAG
GGTAGCTGTGGTACTCCATAGTATTCCCATCGCCATCTTTTTTGTAATGCCATTCCTTTTGCATTTTTGGGATTCTAGGTCACGTTCTTGTTTTGCAATC
TTCTATGATTTTGTGAAAGGACTGCTTTTCCATGCTGCTGGGATTATACTGGCAATTATTTTCCCGATTATCCTTTCTATTTTGCAACTGTTCTTCTCTA
GTTATGCTTTGAGCTGGTTTGCACATCCATACCTGGCATTCTTGATGTTCATCCCCTGCTCACTTGTTGGTTTGCTAATTCCAAGAACTGTTTGGGGTTG
TTTCCCCCTCTCTCAAGATGTTTCAGTTATCAAGAAATCAGAGGAGGCACTAGCTGAAGAAGCAAGATTTTGGGGAGCATTTGGATTTTATGCTTGCTTA
ACTTCAGCTTATCTTGTAGCTGGGCTCAGTGGAGGGTTTTTGACCTTTTCCGTGTCTGCATCTATGCTTCCAGCATGGATCTTCTTTTCCCTATCTATCA
AGTCCAGTGATCATCAATCACCAAGGTCAGCAGTTTTTTATGTAATACCTCTAATTCCATGTCTCACATACTCGGTATATTTTGGGGGGTTTCTTACCCA
ATTTTTGATTGAGAAGATGGGCATGATGGGTGCCGTCCCACCTCCCTATGGTTATTATGTTCCTGATGTTGTAGTGGCAGCATCAGTTGGGGTTGTAACT
GGTTGGTGTGTGGGCCCACTAATACCTGTTTGTAGTCATTGGTTAGCTCGGTCTTCGATCTTGCAGCTCTTGTCGCATATTAGTGTACTTGCTCTGGCTC
TCTCATCTCAATTCTTTCCATACAGCAATGCCGCACCAAAGAGGGTTGTTTTTCAGCATACACTTGTTACTACAGGTGTAAATAGGATTGTGGACTCCAG
CTATGAATTTTCTGTTGTAGATTCCAATTCTTTATTGTTTCTTTTCAAATATGCTCCCGAAGTGGCAAAGGAATTGCATATTGGCCAAGAGTTATCTTTT
GAAACTGCTAATATGTCTCACCGAGAGACTTGGATGGGAATTTTTCCAGTGCCTTTCTTGTTTTCTCAAAGCTTAAAGTTCCCGGCAAGGAGTGATGGCA
TTTTGAAACGCTATAGATATTTCCCCCACTTATCTATTTACAAGCCACATACCGTCTCCAGCGACAAATCTCGGAGAGTTTACTTGGAATTTTATTTGGG
TGACTTGGAGGAGGTTTGGGTAGCAGTCCTTAACATAACCGGTCCTTTATCAAGCTGGTCATTTGCAGACAACATGCTTTCAGTTCCTGAGACAGTTGAT
GGTGGTCCACCATCCTACATACTAAGACTTAGTGGAAACAGCCAACGAAATTGGACTTTCTGGTTAGAGGCTAGCAGTTCTGATGATTTAAGGGTGGAAG
TTGCTGTGGTAGACCAAGTTTTAGATGATGAAGCAAGGAGGTTGAAGGGCCTTTTCCCAGAGTGGGCTGATGTCATTGCCTATTCTTCCTTTATGTCCAG
CTACATTTTCTGA
AA sequence
>Potri.008G175400.1 pacid=42807930 polypeptide=Potri.008G175400.1.p locus=Potri.008G175400 ID=Potri.008G175400.1.v4.1 annot-version=v4.1
MASRLSSRDVSGFKFIFFLAIIYTIISLLVHSVLHMKFITPLSIDAPLDRFSEARAIHHVAVLTKDDRQEGRPGLRKAAAYIKEQLEMLKERAESNIRIE
VEETTVNGSFNMIFLGHGISFAYRDHINIVARISSADLQETDPSVLINGHFDSPLGSPGAGDCGSCVASMLELARVTVESGWIPPRPIIFLFNGAEELFM
LGSHGFMTTHKWRDSVGASINVEASGTAGPDLVCQSGPGSWPSQVYAESAVYPMAHSAAQDIFPVIPGDTDYRIFSQDHGNIPSLDIIFLLGGYYYHTSY
DTLDKLLPGSIQARGDNLLSILKAFTNSSKLQSARERESKATTNDYKDERAVFFDYLSWFLIFYSRRVAVVLHSIPIAIFFVMPFLLHFWDSRSRSCFAI
FYDFVKGLLFHAAGIILAIIFPIILSILQLFFSSYALSWFAHPYLAFLMFIPCSLVGLLIPRTVWGCFPLSQDVSVIKKSEEALAEEARFWGAFGFYACL
TSAYLVAGLSGGFLTFSVSASMLPAWIFFSLSIKSSDHQSPRSAVFYVIPLIPCLTYSVYFGGFLTQFLIEKMGMMGAVPPPYGYYVPDVVVAASVGVVT
GWCVGPLIPVCSHWLARSSILQLLSHISVLALALSSQFFPYSNAAPKRVVFQHTLVTTGVNRIVDSSYEFSVVDSNSLLFLFKYAPEVAKELHIGQELSF
ETANMSHRETWMGIFPVPFLFSQSLKFPARSDGILKRYRYFPHLSIYKPHTVSSDKSRRVYLEFYLGDLEEVWVAVLNITGPLSSWSFADNMLSVPETVD
GGPPSYILRLSGNSQRNWTFWLEASSSDDLRVEVAVVDQVLDDEARRLKGLFPEWADVIAYSSFMSSYIF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G67420 Zn-dependent exopeptidases sup... Potri.008G175400
[exp]
0 1
AT1G49730 Protein kinase superfamily pro... Potri.004G140301
[exp]
5.47 0.8906
AT5G04420 Galactose oxidase/kelch repeat... Potri.008G030901
[exp]
6.00 0.9158
AT3G61050 AtCLB, NTMCTYPE... calcium-dependent lipid-bindin... Potri.014G072800
[exp]
7.21 0.8853
AT1G20760 Calcium-binding EF hand family... Potri.002G008300
[exp]
8.48 0.9013
AT2G37980 O-fucosyltransferase family pr... Potri.006G095300
[exp]
9.59 0.8997
AT2G34710 HD ATHB14, PHB-1D,... PHABULOSA 1D, PHABULOSA, ARABI... Potri.001G372300
[exp]
10.72 0.8866 PHB.2
AT4G27490 3'-5'-exoribonuclease family p... Potri.004G212500
[exp]
11.04 0.8716
AT2G38840 Guanylate-binding family prote... Potri.005G217300
[exp]
11.31 0.8884
AT1G14710 hydroxyproline-rich glycoprote... Potri.010G102100
[exp]
13.56 0.8779
AT3G54860 ATVPS33 VACUOLAR PROTEIN SORTING 33, S... Potri.008G035600
[exp]
14.07 0.8895 Pt-VPS33.2

Potri.008G175400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.