Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67430 282 / 1e-98 Ribosomal protein L22p/L17e family protein (.1.2) AT1G27400 282 / 1e-98 Ribosomal protein L22p/L17e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G060400 [exp] 306 / 3e-108 AT1G67430 299 / 3e-105 Ribosomal protein L22p/L17e family protein (.1.2) Potri.015G094400 [exp] 300 / 9e-106 AT1G67430 324 / 4e-115 Ribosomal protein L22p/L17e family protein (.1.2) Potri.012G096600 [exp] 298 / 5e-105 AT1G27400 321 / 4e-114 Ribosomal protein L22p/L17e family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006421 [exp] 275 / 2e-95 AT1G67430 315 / 1e-111 Ribosomal protein L22p/L17e family protein (.1.2) Lus10015792 [exp] 246 / 8e-77 AT1G67420 511 / 2e-168 Zn-dependent exopeptidases superfamily protein (.1.2) Lus10037015 [exp] 246 / 4e-76 AT1G67420 1104 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00237 [poplar] [flax] Ribosomal_L22 Ribosomal protein L22p/L17e
Representative CDS sequence Show only first row Show all	>Potri.008G175500.1 pacid=42806828 polypeptide=Potri.008G175500.1.p locus=Potri.008G175500 ID=Potri.008G175500.1.v4.1 annot-version=v4.1 ATGGTGAAGTACTCTAGGGAGCCTGATAATCCCACTAAGTCCTGCAAAGCAAGGGGCGGTGACCTCAGAGTTCATTTTAAGAATACAAGGGAGACAGCTT TTGCTTTGAGGAAGTTGCCTTTGGCCAAGGCCAAGAGGTACCTGGAAGATGTCCTGGCTCACAAGCAGGCCATTCCATTCCGACGTTTCTGTGGTGGAGT TGGGCGAACTGCTCAAGCAAAGAACAGGCACTCAAACGGACAAGGACGCTGGCCTGCCAAGTCTGCAAGGTTCATCCTGGACTTGCTCAAGAATGCTGAG AGCAACGCTGAGCTCAAGGGTTTGGATGTGGATGCACTCTACATATCTCACATCCAGGTGAATCAGGCACAGAAGCAGAGGCGTCGTACATATAGGGCAC ATGGAAGAATTAATCCTTACATGTCCAGCCCGTGCCACATTGAGTTGGTTTTGTCTGAGAAGGAAGAGCCAGTTAAGAAAGAGCCTGAGACCCAGATAGC AACCAGCAAGTCAAAGAAGTCGCAAGCTTCTTCTTGA
AA sequence Show only first row Show all	>Potri.008G175500.1 pacid=42806828 polypeptide=Potri.008G175500.1.p locus=Potri.008G175500 ID=Potri.008G175500.1.v4.1 annot-version=v4.1 MVKYSREPDNPTKSCKARGGDLRVHFKNTRETAFALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPAKSARFILDLLKNAE SNAELKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELVLSEKEEPVKKEPETQIATSKSKKSQASS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67430			Ribosomal protein L22p/L17e fa...		Potri.008G175500 [exp]	0	1
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Potri.002G140400 [exp]	3.00	0.9477	Pt-RPS11.5
AT5G27700			Ribosomal protein S21e (.1)		Potri.013G017600 [exp]	5.65	0.9338
AT3G05590		RPL18	ribosomal protein L18 (.1)		Potri.005G023500 [exp]	5.74	0.9280	Pt-RPL18.12
AT5G02960			Ribosomal protein S12/S23 fami...		Potri.008G044400 [exp]	8.06	0.9244	Pt-RPS23.3
AT4G27090			Ribosomal protein L14 (.1)		Potri.010G069900 [exp]	8.24	0.9272
AT3G59680			unknown protein		Potri.019G112300 [exp]	10.53	0.8773
AT3G53740			Ribosomal protein L36e family ...		Potri.012G142600 [exp]	16.43	0.9070
AT5G59850			Ribosomal protein S8 family pr...		Potri.001G118100 [exp]	17.88	0.9120	Pt-WRP15.2
AT3G05560			Ribosomal L22e protein family ...		Potri.014G128800 [exp]	18.00	0.9212	RPL22.2
					Potri.017G139650 [exp]	19.54	0.7912

Compare expression of checked genes

Potri.008G175500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.