Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60420 339 / 2e-112 DC1 domain-containing protein (.1) AT4G31240 165 / 4e-47 protein kinase C-like zinc finger protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G059401 [exp] 521 / 0 AT1G60420 667 / 0.0 DC1 domain-containing protein (.1) Potri.010G059550 [exp] 520 / 0 AT1G60420 658 / 0.0 DC1 domain-containing protein (.1) Potri.010G060200 [exp] 515 / 0 AT1G60420 679 / 0.0 DC1 domain-containing protein (.1) Potri.010G059700 [exp] 512 / 3e-180 AT1G60420 680 / 0.0 DC1 domain-containing protein (.1) Potri.010G059600 [exp] 502 / 2e-176 AT1G60420 666 / 0.0 DC1 domain-containing protein (.1) Potri.010G059900 [exp] 502 / 3e-176 AT1G60420 652 / 0.0 DC1 domain-containing protein (.1) Potri.010G060100 [exp] 480 / 1e-167 AT1G60420 654 / 0.0 DC1 domain-containing protein (.1) Potri.010G060300 [exp] 436 / 6e-152 AT1G60420 560 / 0.0 DC1 domain-containing protein (.1) Potri.010G059800 [exp] 295 / 9e-98 AT1G60420 390 / 1e-132 DC1 domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013017 [exp] 336 / 5e-111 AT1G60420 624 / 0.0 DC1 domain-containing protein (.1) Lus10017252 [exp] 168 / 6e-48 AT1G60420 311 / 1e-100 DC1 domain-containing protein (.1) Lus10005618 [exp] 167 / 8e-48 AT1G60420 300 / 2e-96 DC1 domain-containing protein (.1) Lus10029148 [exp] 56 / 2e-09 AT1G60420 121 / 5e-33 DC1 domain-containing protein (.1) Lus10014798 [exp] 40 / 0.0008 AT3G15360 181 / 2e-58 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10040887 [exp] 40 / 0.001 AT3G15360 182 / 4e-59 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF13905 [poplar] [flax] Thioredoxin_8 Thioredoxin-like
Representative CDS sequence Show only first row Show all	>Potri.008G175600.2 pacid=42807476 polypeptide=Potri.008G175600.2.p locus=Potri.008G175600 ID=Potri.008G175600.2.v4.1 annot-version=v4.1 ATGACCAACGAAGACAGGGGCTTGCTCATCCGCAACAACGTCAGCAATTTGGGTGGGAGGATCGTGGGATTCTATTTCTCTGGTGCATGGTACGGGCCAT GCCGAAGTTTCACCCCATTAGATGACGAGTCCTTCAATACGTACTTCTCCAAAATGCCATGTCTTGCCATTCCATTTTCTGATACGGAGACCTGCAAACA TCTCAAGGAAGTGTTCAAAGTAAGAGGGATTCCTAATCTTGTCATTTTATTCGATGCTCATGCGAAGGTTTCATGTGATGGTGGTGTCAGAACCATCAGG GAACATGGTATCCCTGTGTTGGACCTTGAAGGAAAATTGGTTGGCTTGTATTTTTCAGCGCATGGTCATAGGACGTGCCGTGAATTCACTCCTAAACTAG TGGAATTCTATAAGGTGCTCAAGGAAAAAGGAGAGAACTTTGAGACAATGCCTTGGTTGGCTTTGCCATTTAAGAACAGGAGCTGTAAGAAGCTAGCACA TCATAATTGGCAGGATGGAAAGACTTTGAACCCAAATGTGGCTGAAGTTATTGAAGACCGTGGTCTTGAAGTCTATCCATTTACACCGAAGAAACTCGAT GAGTTAGCTGTGATTGACAAGGCAAAACTGGAAGCAGTTTTGCTTAATGGGGAAAATGATTTTGTGACTGACAAAAGCGTGTCTGAGCTAGTTGGAAAGA ACATTCTTCTCCACTTCTCAGATCAACGGTGCCCTCCCTGTCGTTCCTTTTTACCCGAGCTAATTGAAGCATACCACACAATTAAAGCAAAAGACAATGC CTTTGAGGTGATCTTCATCTCAAGCGACCAAATGCCTTGGTTAGCCCTTCCATTTGGCGACGTAAGGAAACAAATCCTGGTGCGGAAGTTCAAAATTCAA GGGATCCCTGCAGCTGTAGCAATTGGTCCCAGTGGCCGGACCACTATTAAGGAAGCTCGGATGCACTTGACAGCTTACAGGGCAGATGCTTTTCCCTTCA CCGAGGAACATCTAAAGCAATTGGAGGAGAAGCTTGAGGAACAAGCAAAGGGGTGGCCAGAGAAAGTGAAACACGAACTTCATGCTGAACATGAGCTTAT ACGTTCTAAACACTAA
AA sequence Show only first row Show all	>Potri.008G175600.2 pacid=42807476 polypeptide=Potri.008G175600.2.p locus=Potri.008G175600 ID=Potri.008G175600.2.v4.1 annot-version=v4.1 MTNEDRGLLIRNNVSNLGGRIVGFYFSGAWYGPCRSFTPLDDESFNTYFSKMPCLAIPFSDTETCKHLKEVFKVRGIPNLVILFDAHAKVSCDGGVRTIR EHGIPVLDLEGKLVGLYFSAHGHRTCREFTPKLVEFYKVLKEKGENFETMPWLALPFKNRSCKKLAHHNWQDGKTLNPNVAEVIEDRGLEVYPFTPKKLD ELAVIDKAKLEAVLLNGENDFVTDKSVSELVGKNILLHFSDQRCPPCRSFLPELIEAYHTIKAKDNAFEVIFISSDQMPWLALPFGDVRKQILVRKFKIQ GIPAAVAIGPSGRTTIKEARMHLTAYRADAFPFTEEHLKQLEEKLEEQAKGWPEKVKHELHAEHELIRSKH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60420			DC1 domain-containing protein ...		Potri.008G175600 [exp]	0	1
AT3G57830			Leucine-rich repeat protein ki...		Potri.006G057500 [exp]	1.73	0.8329
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.003G053000 [exp]	18.60	0.8261
AT5G12890			UDP-Glycosyltransferase superf...		Potri.017G077500 [exp]	19.18	0.8146
AT4G03500			Ankyrin repeat family protein ...		Potri.019G108000 [exp]	20.12	0.8092
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Potri.005G111400 [exp]	29.18	0.8071
AT3G05140		RBK2	ROP binding protein kinases 2 ...		Potri.013G028100 [exp]	29.25	0.8031
AT5G48270			Plant protein of unknown funct...		Potri.010G047700 [exp]	31.85	0.8061
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.017G013400 [exp]	36.08	0.7443
AT2G24800			Peroxidase superfamily protein...		Potri.006G267400 [exp]	38.15	0.7786
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.018G051400 [exp]	60.44	0.7786

Compare expression of checked genes

Potri.008G175600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.