Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67480 488 / 2e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G27420 269 / 5e-88 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 127 / 7e-33 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G16250 112 / 7e-28 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61350 103 / 9e-25 SKIP4 SKP1 interacting partner 4 (.1) AT1G30090 103 / 1e-24 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G60570 102 / 3e-24 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G63220 101 / 5e-24 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G21950 97 / 3e-22 SKIP6 SKP1 interacting partner 6 (.1) AT2G24540 96 / 7e-22 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G059200 [exp] 665 / 0 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.013G104300 [exp] 621 / 0 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G004500 [exp] 130 / 4e-34 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G083200 [exp] 120 / 6e-31 AT3G61350 299 / 7e-100 SKP1 interacting partner 4 (.1) Potri.001G008000 [exp] 121 / 1e-30 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G193800 [exp] 118 / 8e-30 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 118 / 1e-29 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G050600 [exp] 112 / 8e-28 AT3G63220 535 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G211700 [exp] 108 / 1e-26 AT3G63220 510 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019425 [exp] 130 / 1e-33 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 126 / 2e-32 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 125 / 3e-32 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 119 / 4e-30 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002112 [exp] 117 / 4e-29 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017821 [exp] 114 / 6e-28 AT3G61350 328 / 3e-110 SKP1 interacting partner 4 (.1) Lus10022061 [exp] 112 / 7e-28 AT3G63220 476 / 7e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10013899 [exp] 112 / 7e-27 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10023608 [exp] 103 / 3e-24 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10030489 [exp] 100 / 5e-23 AT2G02870 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.008G176000.1 pacid=42805822 polypeptide=Potri.008G176000.1.p locus=Potri.008G176000 ID=Potri.008G176000.1.v4.1 annot-version=v4.1 ATGTCTTTCTTCACTTTGATCACACAAGATAATCCTCTAGTGCATTCAAAGAGCAACCCTGTAGTAGATTCAAGGGTTGCTCATGATATTGATGTCCTCA TTGTACCTGGATTGCCCGATGATGTGGCAAAGTATTGCCTTGCACTTGTTCCTCGCCGCTACCTCCCAGCTATGGGTGCTGTTTGCAAGAAATGGAGGTC ATTTCTTAAAAGCCAAGAGTTCATCACTGTGCGAAAATTAGCTGGCTTGCTTGAGGAATGGCTATATGTCTTAACTATGGATTCTGAAGGAAAAGAAAGC CACTGGGTGGTTTTGGACCGTTTGGGACACAAACGCCAGCTACTTCCACCAATGCCTGGTCCTACAAAGGCTGGGTTTGGGGTTGTTGTTCTAAACGGAA AGCTTCTTGTTATGGCTGGTCATTCATTGATTGATGGGACCGGCACTGCATCAGCAGATGTTTATGAATATGATTGCTGCCTCAACAGTTGGAGTAAATT GTCAAGAATGAATGTTGCCCGGTATGATTTTGCCTGTGCAGAGGTTAACGGCAAGGTTTATGCTGCTGGGGGATATGGAATGGATGGAGATAGTCTCTCC AGTGTTGAGATGTATGATCCTGACACTAACACATGGACCATGATAGAGAGTCTTCGCCGCCCAAGATGGGGTTGCTTTGCCTGTGGCTTTGAGGGCAAGC TTTATGTCATGGGAGGAAGGTCAACCTTCAGCATAGGCAATTCAAGGTCTGTGGACGTGTACAATCCAGAAAGGCACAGCTGGTGTGAGATGAAGAATGG TTGTGTGATGGTTACTGCCCATGCTGTTCTGGGAAAGAAACTCTTCTGTATGGAGTGGAAGAACCAGCGGAAACTAGCAATATTCAATCCAGAGGATAGT TCTTGGAAAACGGTAGCTGTTCCATTGACAGGGAGCTCAAGTATTGGTTTTCGTTTTGGAATCCTTGACGGGAAACTTCTATTATTCTCGCTACAGGAAG AACCAGGTTATCGAACTCTGCTGTATGATCCTAATGCTTCTGCAGGTTCCGAATGGTGTACTTCTGAGATAAAGCCTTCTGGATGCTGCTTGTGCAGCGT TACCATCAAGGCATGA
AA sequence Show only first row Show all	>Potri.008G176000.1 pacid=42805822 polypeptide=Potri.008G176000.1.p locus=Potri.008G176000 ID=Potri.008G176000.1.v4.1 annot-version=v4.1 MSFFTLITQDNPLVHSKSNPVVDSRVAHDIDVLIVPGLPDDVAKYCLALVPRRYLPAMGAVCKKWRSFLKSQEFITVRKLAGLLEEWLYVLTMDSEGKES HWVVLDRLGHKRQLLPPMPGPTKAGFGVVVLNGKLLVMAGHSLIDGTGTASADVYEYDCCLNSWSKLSRMNVARYDFACAEVNGKVYAAGGYGMDGDSLS SVEMYDPDTNTWTMIESLRRPRWGCFACGFEGKLYVMGGRSTFSIGNSRSVDVYNPERHSWCEMKNGCVMVTAHAVLGKKLFCMEWKNQRKLAIFNPEDS SWKTVAVPLTGSSSIGFRFGILDGKLLLFSLQEEPGYRTLLYDPNASAGSEWCTSEIKPSGCCLCSVTIKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67480			Galactose oxidase/kelch repeat...		Potri.008G176000 [exp]	0	1
					Potri.008G175950 [exp]	2.00	0.9457
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.017G048200 [exp]	5.47	0.8843
					Potri.004G011450 [exp]	16.43	0.8314
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Potri.006G057200 [exp]	20.00	0.8450
AT1G67900			Phototropic-responsive NPH3 fa...		Potri.010G046800 [exp]	20.04	0.7771
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Potri.002G019800 [exp]	28.14	0.8511
AT5G14410			unknown protein		Potri.001G342100 [exp]	28.14	0.8721
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.002G177900 [exp]	28.98	0.8486
AT5G05280			RING/U-box superfamily protein...		Potri.001G159300 [exp]	31.74	0.7942
AT1G78560			Sodium Bile acid symporter fam...		Potri.003G008700 [exp]	37.50	0.8036

Compare expression of checked genes

Potri.008G176000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.