Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24310 392 / 1e-135 unknown protein AT3G32904 41 / 0.001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G059100 [exp] 443 / 1e-155 AT1G24310 448 / 1e-157 unknown protein Potri.011G148800 [exp] 44 / 0.0002 AT1G10390 606 / 0.0 Nucleoporin autopeptidase (.1.2) Potri.001G453200 [exp] 42 / 0.0008 AT1G10390 684 / 0.0 Nucleoporin autopeptidase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037010 [exp] 379 / 5e-130 AT1G24310 478 / 2e-169 unknown protein Lus10015795 [exp] 318 / 1e-106 AT1G24310 404 / 2e-140 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13874 [poplar] [flax] Nup54 Nucleoporin complex subunit 54
Representative CDS sequence Show only first row Show all	>Potri.008G176100.1 pacid=42807692 polypeptide=Potri.008G176101.1.p locus=Potri.008G176100 ID=Potri.008G176100.1.v4.1 annot-version=v4.1 ATGTTCGGCACTCCATCTTCCACCCCCGCCTTCGGCACGCCGTCTTCCACCCCGCCATTCGGCATCCCCTCTTCTACTCCCTTATTCGGCACTCCTTCAA CGCCAGCTTTCGCTAATGGAGGATTCGGTTCTTCTTTATTCTCTACTCCATTTACTTCTCAAACTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACA AACTTCGCTTTTTCAGCAACCGTCTACTACTGGTTTCGGATTTCAACAGCAACAGCAGCAGACTCCGTTCGCTACGCCCCTTCAAACGACACCGTTCCCT TCTCCTCCTCCTCCTCAATTGAGTACTCAGATGGCTCTTGTTGCTCCTCTTCCTTTCTCTCTCGCCGATCGCGACATTCAGGCGATTGTGGATGCTTATA AAGAGGACCCTGGGAACCTTAAGTATGCTTTCAAGTATTTGTTGTTAAGTGTAACTGACCCGCGGCATAGAGGGAAGCTTGCTGGTGTATCAGACATCAT GTGGGCGGAGTCTATGGCGAAGCTAGAGGGTATGGAAGGTACAGATAGAGAACGCCTCTGGCCTCAGCTTGTTCGAGGTTTCAAAGATCTTTCACACCGC CTCAAGCTCCAAGATGAAGTAATTGTTTCAGATGCAGAGAGATTGCGAATGACCCAAAGCAACATAAAAATGCTTCAAAGGCATTTTCAAGCTGTGGCTC TTCCAAGGATTGAAAGAATGAGACAGAAAGAGCAATGTCTTCAGAGGCATCTTTTAAGGGTGATGAGAATAATGGAGGCATTGGAGGGTAAGGGTTTCCG ATTGCCCTTAACAAAAGCGGAAGCTGAGTTGGCTGAGAAGTTAGCTGCAATAATTAGACAGCTCAAAGGATCTGGCGCAGAACTTTCTAGGAGGGTTCAA AACCTACTCACTGTATCTCGTGTTCAAGAAAATGGAATTGGTGCTGGAGGTTCTCTTTATCTTCCAGGATCAACCAAAATACATGAACAAAGTCTTGCTG ATATGCAGGAGGTTTTACAACAGCAGACTGAAGCTATTGCAAGGCTTGGCAATGTGTTGAAGCGAGACATCAGGGACATGGAAATTATGATGGCCGAGGG CACAGAGATGACAGAATAA
AA sequence Show only first row Show all	>Potri.008G176100.1 pacid=42807692 polypeptide=Potri.008G176101.1.p locus=Potri.008G176100 ID=Potri.008G176100.1.v4.1 annot-version=v4.1 MFGTPSSTPAFGTPSSTPPFGIPSSTPLFGTPSTPAFANGGFGSSLFSTPFTSQTQQQQQQQQQQQQTSLFQQPSTTGFGFQQQQQQTPFATPLQTTPFP SPPPPQLSTQMALVAPLPFSLADRDIQAIVDAYKEDPGNLKYAFKYLLLSVTDPRHRGKLAGVSDIMWAESMAKLEGMEGTDRERLWPQLVRGFKDLSHR LKLQDEVIVSDAERLRMTQSNIKMLQRHFQAVALPRIERMRQKEQCLQRHLLRVMRIMEALEGKGFRLPLTKAEAELAEKLAAIIRQLKGSGAELSRRVQ NLLTVSRVQENGIGAGGSLYLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIMMAEGTEMTE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24310			unknown protein		Potri.008G176100 [exp]	0	1
AT2G13840			Polymerase/histidinol phosphat...		Potri.001G206400 [exp]	1.41	0.9262
AT1G78420			RING/U-box superfamily protein...		Potri.011G096000 [exp]	2.82	0.8980
AT2G38570			unknown protein		Potri.006G109500 [exp]	3.46	0.8892
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Potri.013G046900 [exp]	4.47	0.8555
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.008G067400 [exp]	7.87	0.8314
					Potri.009G125700 [exp]	8.06	0.8515
AT5G16790		AtTHO7	Tho complex subunit 7/Mft1p (....		Potri.013G080200 [exp]	11.22	0.8453
AT1G05030			Major facilitator superfamily ...		Potri.014G060800 [exp]	11.74	0.8409
AT1G24267			Protein of unknown function (D...		Potri.001G058700 [exp]	15.16	0.8153
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Potri.010G236500 [exp]	15.90	0.8544

Compare expression of checked genes

Potri.008G176100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.