Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01860 67 / 2e-13 unknown protein AT5G40860 53 / 3e-08 unknown protein AT3G27210 51 / 2e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G058700 [exp] 348 / 2e-122 AT3G01860 83 / 4e-19 unknown protein Potri.001G332500 [exp] 103 / 6e-27 AT3G01860 96 / 3e-24 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041572 [exp] 100 / 3e-25 AT3G01860 77 / 1e-16 unknown protein Lus10035217 [exp] 62 / 2e-11 AT3G27210 79 / 3e-18 unknown protein Lus10032051 [exp] 60 / 3e-10 AT5G40870 698 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10022348 [exp] 46 / 1e-05 ND / Lus10011366 [exp] 41 / 0.0003 AT3G27210 39 / 0.001 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G176300.2 pacid=42808572 polypeptide=Potri.008G176300.2.p locus=Potri.008G176300 ID=Potri.008G176300.2.v4.1 annot-version=v4.1 ATGGGCAATTGTGCTTCAGTTCAAAAGAAAACAGGCCCTGCTTTGAAACTCAAATGCACCATTGATTCTCAAGGAAACTGTATCCATATTGAATCACCTG TGAAGGACAGCAGCACAGTGAATGGTGATCACTCCATGACTGAACAACTCAATCCCAAGCCCCAGTCCTTGTCGCCAGTGCCTTATCAAGCCAGTGTTAA TGACTTGAGTAACCGAGAGGATATGTTTTTTGATTCTCATCCCTGGATAGAGTCTGATTGTGAAGATTACCTCAGCGTCGATGGTGATTTCACTCCATCA TGTGGCACTACTCCTATTCACCAAGGCAGCTATATAGAAATTCCTCTTCCATGTGAAGAGTCTCTCTGTAGTAGTAGTTCAGCCAGGTCAATACCTGAAC CTTCTCCAGCTGATAGGAAGAAGCAACTAATCGAGCTCTTTCGAGAGAACATCAACGACGATCTGGCTGATGACAACCAAAGTTTCCAAGACACAGTCAA CGGCAAGCCTATTGCTGTTTACCTCCCTTCAAAATATACAAATGGAAGTCCATATCAATATGCAGAAAGCTCTGTCCGCAGCAATGAAACAACTCCACAC AGTGGTTCCAAATCTGGAAAAGAGAAACCAACTCATTTTTCACATTGCTGCCTTCCAAATATTGTGCGGAGCCTGAGCTTTAGTGAGAGGAGGAAGAGGC TTAGCCCTGCCCATAGTGGTTAA
AA sequence Show only first row Show all	>Potri.008G176300.2 pacid=42808572 polypeptide=Potri.008G176300.2.p locus=Potri.008G176300 ID=Potri.008G176300.2.v4.1 annot-version=v4.1 MGNCASVQKKTGPALKLKCTIDSQGNCIHIESPVKDSSTVNGDHSMTEQLNPKPQSLSPVPYQASVNDLSNREDMFFDSHPWIESDCEDYLSVDGDFTPS CGTTPIHQGSYIEIPLPCEESLCSSSSARSIPEPSPADRKKQLIELFRENINDDLADDNQSFQDTVNGKPIAVYLPSKYTNGSPYQYAESSVRSNETTPH SGSKSGKEKPTHFSHCCLPNIVRSLSFSERRKRLSPAHSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01860			unknown protein		Potri.008G176300 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Potri.008G033900 [exp]	2.00	0.8287
AT1G23460			Pectin lyase-like superfamily ...		Potri.011G159000 [exp]	3.60	0.8492
AT4G36880		CP1	cysteine proteinase1 (.1)		Potri.005G141600 [exp]	4.00	0.7719
AT2G07180			Protein kinase superfamily pro...		Potri.006G079600 [exp]	4.47	0.8154
AT1G23460			Pectin lyase-like superfamily ...		Potri.011G159801 [exp]	7.34	0.8171
					Potri.003G098301 [exp]	9.16	0.8165
AT4G10550			Subtilase family protein (.1.2...		Potri.011G146300 [exp]	9.38	0.7999
AT5G46940			Plant invertase/pectin methyle...		Potri.014G044100 [exp]	10.24	0.8026
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033101 [exp]	10.39	0.8040
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Potri.003G113000 [exp]	11.61	0.7963

Compare expression of checked genes

Potri.008G176300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.