Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67510 922 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G01210 512 / 9e-173 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 479 / 4e-160 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 447 / 3e-148 Leucine-rich repeat protein kinase family protein (.1) AT2G42290 427 / 8e-141 Leucine-rich repeat protein kinase family protein (.1) AT4G34220 330 / 3e-102 Leucine-rich repeat protein kinase family protein (.1) AT5G67280 323 / 1e-99 RLK receptor-like kinase (.1) AT2G15300 323 / 1e-99 Leucine-rich repeat protein kinase family protein (.1) AT3G57830 296 / 2e-90 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 263 / 8e-78 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G058200 [exp] 1177 / 0 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 520 / 6e-176 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 508 / 6e-171 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G095700 [exp] 475 / 1e-158 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G119000 [exp] 459 / 2e-152 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G057500 [exp] 457 / 3e-152 AT3G57830 707 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G050800 [exp] 453 / 8e-151 AT3G57830 713 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G048800 [exp] 338 / 3e-105 AT2G23300 706 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G300700 [exp] 308 / 6e-94 AT4G34220 620 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015799 [exp] 878 / 0 AT1G67510 959 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037006 [exp] 832 / 0 AT1G67510 915 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017611 [exp] 461 / 7e-153 AT1G66830 672 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033569 [exp] 451 / 3e-149 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10043480 [exp] 423 / 7e-139 AT2G01210 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034108 [exp] 410 / 1e-133 AT2G01210 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021022 [exp] 401 / 1e-130 AT3G57830 639 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023830 [exp] 286 / 1e-90 AT3G57830 382 / 7e-129 Leucine-rich repeat protein kinase family protein (.1) Lus10019315 [exp] 282 / 1e-84 AT4G37250 728 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029005 [exp] 263 / 2e-77 AT5G58300 612 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.008G176900.1 pacid=42807866 polypeptide=Potri.008G176900.1.p locus=Potri.008G176900 ID=Potri.008G176900.1.v4.1 annot-version=v4.1 ATGAAGAAAAACCTCTTATTAACGCTAGTCTTTCTCTTCTTTCACTTCCTTGCTAACACCGAACTAAGCCACTCCCTCACACCTGATGGACTCTCCCTCC TATCCTTAAAATCAGCCGTTGATCAAACATCAGCTGGCTCTGCTTTCTCTGACTGGAACGAAGATGACCCCACTCCATGTCTCTGGACCGGAATCTCCTG CATGAACATAACCGGATTGCCAGACCCTCATGTTGTAGGCATTGCAATCTCCGGCAAGAATCTCCGCGGCTATATTCCATCAGAGCTTGGGAACTTAATT TATCTTCGGAGACTTAATCTTCACAACAACAACTTCTACGGTCCAATACCTGACCAGTTGTTTAACGCTACTGCACTTCACGGTCTCTTTCTCTACGGTA ACAATCTCTCTGGTTCTCTCCCTCCTTCAATCTGTAACCTCCCTCGTCTCCAGAATCTTGATCTTTCCAACAACTCGCTGTCTGGTTCTTTGCCTCAAAA CTTGAATAGCTGCAAGCAGTTGCAGAGATTGATCCTTGCGAAGAATAAATTCTCTGGTCCAATTCCAGCTGGGATTTGGCCTGACTTGGATAATTTATTG CAGCTTGATCTCTCTGATAATGCTTTCAATGGATCCATTCCTAATGATGTTGGTGAGCTTAAGTCTCTGTCCAACACTTTAAATCTTTCTTTCAATCATT TATCGGGTAGGATTCCGAAATCACTGGGAAATTTACCTATTACTGTCAGTTTTGATCTGCGAAGCAACAATTTCAGCGGTGAGATACCTCAAACAGGGTC TTTTGCAAACCAAGGACCGACTGCTTTCCTCAACAACCCTTTGCTTTGCGGGTTTCCGCTTCATAAATCCTGCAAGGACTCTGCAAAGAGCTCACCGGGA AATCAGAATTCAACTCCGGTTTCTGATAATAATTCTAAAAAGGGATTAAGTCCCGGTTTGATAATATTAATCTCAGTAGCTAACGCGGCTGGTGTAGCGC TTCTTGGTCTAGTAATAGTATACATTTACTGGAAAAAGAAGGATGATTCTAATGGTTGTAGCTGCACTGGAAAAAGCAAATTTGGTGGCAATGAGAAATC ACACTTGTGTTCGCTATGTTATTGTGTTAATGGGCTTCGAATTGAGGAGTCTGATTTGGAAGATCAGGAAAAGGTGGAAAGAGGGAAACCAGAAGGAGAG CTTGTGGCAATCGATAAAGGTTTCACCTTTGAGCTTGATGAATTGCTAAAAGCATCTGCTTATGTGTTGGGGAAGAGTGGGTTGGGGATAGTGTATAAAG TAGTGCTTGACAATGGCAGCCCTGTGGCTGTGAGGAGGCTTGGCGAAGGAGGAGAGCAGAGGTATAAAGAGTTTGTAGCGGAGGCGCAGGCTATTGGAAA GGTCAAGCATCCAAATGTTGTCAAGTTGAGAGCTTATTATTGGGCTCCAGATGAGAAGCTTTTAATCAGTGATTTCATCTCCAATGGCAACTTGGCTAAT GCTCTTCGAGGGAGAAATGGACAGCCATCAAGTCTTTCATGGTCAACCAGGCTGAGAATCGCCAAGGGAACAGCCAGGGGCTTAGCCTACCTTCACGAAT GCAGCCCAAGAAAATTTGTCCACGGAGACCTCAAGCCATCTAATATTCTCCTCGACAACAAATTCCAACCTTACATTTCTGATTTTGGCCTGAATCGACT GATCAACATCACCGGCAATAATCCCTCCTCTTCAGGTGGCTTTATAGGTGGAGCACTCCCTTACTTAAAATCAGTTCAAACAGAGCGACCAAACAACTAC CGTCCTCCAGAGGCCCGTGTTTCTGGTAACAGACCAACCCAAAAATGGGATGTGTATTCATTTGGAGTTGTTTTGCTTGAATTGCTTACTGGAAAATCTC CAGAGCTTTCACCATCCGCATCCACTTCGATAGAAGTTCCAGACTTGGTGAGATGGGTGAGGAAGGGTTTTGAAGAAGAAAACCCTTTATCAGACATGGT AGATCCATTGTTGCTCCAAGAAGTGCATGCCAAAAAAGAGGTAATAGCAGTTTTTCATGTTGCCCTTGCTTGCGCTGAAGCTGACCCTGAGGTCCGTCCA AGGATGAAAACTGTATCCGAAAATCTTGAAAGGATTGGAACATAG
AA sequence Show only first row Show all	>Potri.008G176900.1 pacid=42807866 polypeptide=Potri.008G176900.1.p locus=Potri.008G176900 ID=Potri.008G176900.1.v4.1 annot-version=v4.1 MKKNLLLTLVFLFFHFLANTELSHSLTPDGLSLLSLKSAVDQTSAGSAFSDWNEDDPTPCLWTGISCMNITGLPDPHVVGIAISGKNLRGYIPSELGNLI YLRRLNLHNNNFYGPIPDQLFNATALHGLFLYGNNLSGSLPPSICNLPRLQNLDLSNNSLSGSLPQNLNSCKQLQRLILAKNKFSGPIPAGIWPDLDNLL QLDLSDNAFNGSIPNDVGELKSLSNTLNLSFNHLSGRIPKSLGNLPITVSFDLRSNNFSGEIPQTGSFANQGPTAFLNNPLLCGFPLHKSCKDSAKSSPG NQNSTPVSDNNSKKGLSPGLIILISVANAAGVALLGLVIVYIYWKKKDDSNGCSCTGKSKFGGNEKSHLCSLCYCVNGLRIEESDLEDQEKVERGKPEGE LVAIDKGFTFELDELLKASAYVLGKSGLGIVYKVVLDNGSPVAVRRLGEGGEQRYKEFVAEAQAIGKVKHPNVVKLRAYYWAPDEKLLISDFISNGNLAN ALRGRNGQPSSLSWSTRLRIAKGTARGLAYLHECSPRKFVHGDLKPSNILLDNKFQPYISDFGLNRLINITGNNPSSSGGFIGGALPYLKSVQTERPNNY RPPEARVSGNRPTQKWDVYSFGVVLLELLTGKSPELSPSASTSIEVPDLVRWVRKGFEEENPLSDMVDPLLLQEVHAKKEVIAVFHVALACAEADPEVRP RMKTVSENLERIGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67510			Leucine-rich repeat protein ki...		Potri.008G176900 [exp]	0	1
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Potri.014G029900 [exp]	3.60	0.9094
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Potri.018G018600 [exp]	8.36	0.8870
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.015G060100 [exp]	8.83	0.9008
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.016G086400 [exp]	9.48	0.9055
AT3G14170			Plant protein of unknown funct...		Potri.003G070200 [exp]	10.00	0.8993
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Potri.014G066200 [exp]	10.09	0.8524
AT5G15740		RRT1	O-fucosyltransferase family pr...		Potri.015G048100 [exp]	12.24	0.8643
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Potri.005G080100 [exp]	12.36	0.8789
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.010G193100 [exp]	13.74	0.8751
AT5G61340			unknown protein		Potri.015G060900 [exp]	15.19	0.8827

Compare expression of checked genes

Potri.008G176900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.