Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24330 1025 / 0 ARM repeat superfamily protein (.1) AT1G27910 1007 / 0 ATPUB45 ARABIDOPSIS THALIANA PLANT U-BOX 45, plant U-box 45 (.1) AT1G67530 998 / 0 ARM repeat superfamily protein (.1.2) AT2G28830 164 / 9e-42 AtPUB12 PLANT U-BOX 12 (.1) AT3G46510 137 / 2e-33 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT4G36550 137 / 2e-33 ARM repeat superfamily protein (.1) AT5G01830 124 / 3e-29 ARM repeat superfamily protein (.1) AT3G54850 117 / 5e-27 ATPUB14 plant U-box 14 (.1) AT5G42340 115 / 1e-26 PUB15 Plant U-Box 15 (.1) AT1G23030 111 / 4e-25 PUB11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G058000 [exp] 1352 / 0 AT1G24330 1079 / 0.0 ARM repeat superfamily protein (.1) Potri.007G023700 [exp] 330 / 3e-101 AT1G67530 328 / 9e-101 ARM repeat superfamily protein (.1.2) Potri.005G122100 [exp] 311 / 1e-93 AT4G36550 441 / 2e-143 ARM repeat superfamily protein (.1) Potri.005G228100 [exp] 246 / 1e-70 AT4G36550 329 / 5e-102 ARM repeat superfamily protein (.1) Potri.002G009900 [exp] 188 / 1e-50 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.001G238500 [exp] 172 / 3e-45 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G128600 [exp] 167 / 1e-43 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.010G226500 [exp] 145 / 3e-36 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.009G029600 [exp] 143 / 2e-35 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015801 [exp] 1088 / 0 AT1G24330 1027 / 0.0 ARM repeat superfamily protein (.1) Lus10006427 [exp] 1082 / 0 AT1G24330 993 / 0.0 ARM repeat superfamily protein (.1) Lus10037005 [exp] 1082 / 0 AT1G24330 1029 / 0.0 ARM repeat superfamily protein (.1) Lus10011370 [exp] 1056 / 0 AT1G24330 1000 / 0.0 ARM repeat superfamily protein (.1) Lus10028307 [exp] 277 / 8e-82 AT4G36550 417 / 1e-135 ARM repeat superfamily protein (.1) Lus10041754 [exp] 272 / 3e-80 AT4G36550 404 / 6e-131 ARM repeat superfamily protein (.1) Lus10037970 [exp] 168 / 9e-44 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10017444 [exp] 145 / 5e-36 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10007511 [exp] 142 / 8e-35 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10016565 [exp] 134 / 2e-32 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.008G177100.1 pacid=42806199 polypeptide=Potri.008G177100.1.p locus=Potri.008G177100 ID=Potri.008G177100.1.v4.1 annot-version=v4.1 ATGGATATTACTGAGGTTGAAGAAAATTTGTTTGCAGCAAGTGAAGCCAAGCTTCATGGAGAAATGTGCAAGGAACTCTCTGTAGTTTATTGCAAAATCT CTTCCATTTTCCCTTCCTTGGAAGCGGCAAGACCTAGGAGTAAATCTGGCATTCAAGCATTATGTTTGTTGCATATAGCCCTTGAGAAAGCCAAGAACGT TCTCAAGCATTGCTCAGAATGCAGTAAACTTTACCTGGCTATAACTGGGGATTCCGTCCTTTTAAAATTTGAAAAGGCAAGATCTGCTCTTGTAGATAGT CTTAGGCGTGTTGAAGATATTGTTCCAGAATCAATTGGATGCCAGATTTTGGAGATTGTAAGTGAACTTGAGGGTACTGAATTCTCACTTGATCCATTGG AGAAGCAAGTTGGTGATGAGATAATTGCATTGCTTCAACAGGGGAGAAAATTTGACGATAGTAATGACAATACCGAGCTAGAATCATTTCATCAGGCTGC TACTAAACTTGGTATTACCTCTTCTAGAGCAGCTCTTACAGAGAGAAGGGCTCTTAAAAAACTCATAGAAAGAGCTCGTGTGGAGGAAGACAAGCGGAAA GAGTCAATTGTGGCCTATCTCTTACATCTCATGAAAAAATACTCCAAGTTATTTAGAAGTGAACTTACAGATGACAATGATTCACAGGGTTCATCACCTT GTTCGCCAACTGTTCAGGGTTCTCTTGAAGATGGAGGCCCTGGTGGCAATGGCCATGCCTTTGAGCGACAGCTATCAAAGCTTAGTTCGTTCAATTTCAA ACCAACCTATAGGAAATCTGGGCAAATGCCTCTTCCACCTGAAGAATTGAGGTGTCCTATATCATTGCACCTGATGTATGATCCAGTCATCATTGCTTCT GGACAAACGTATGAAAGGATCTGCATTGAGAAATGGTTCAGTGATGGGCATGAAACCTGTCCAAAGACTCAACAAAAGCTTTCTCATCGTTGCTTGACTC CTAATTATTGTGTAAAGGGTCTCGTTGCTAGTTGGTGTGAACAGAATGGAGTCCCAGCACCTGATGGCCCCCCTGAGTCTCTTGACCTCAACTATTGGAG GCTGGCAATGTCCCAGTTTGACTCGTCCAATTCAAGAAGATCAGTGGAGAGTGTCAGATCTGGAAAGTTGAAAGGGGTCAAGGTAGTTCCTCTGGAGGAA AGTGGTCCCATTGAGGAGGCTGAAGAAAAAAATGAAAAATTGTCATCGCAACAGGAAGATTCCATGCCAGAAGATGCCTTCGGGTACAATATATTTGAAA TATATAAGAATTTCCTGGCCATTTTGAATGGTGATGAAGAGTTGAAGAAGAAGTGCAAGATAGTAGAACAAGTGAGGCTTCTGTTGAAGGATGATGAGGA GGCCAGGATTTTTATGGGGGCCAACGGGTTTGTCGAAGCACTATTGCAGTTTCTAGAGTCAGCTGTGCGTGCCGGGAGTCCAATGGCCGAGGAAGCTGGA GCGATGGCTCTTTTCAACCTTACTGTCAACAATAACAGAAATAATGAAATGATGTTGGCTGCTGGTGCTATCCCATTGTTGGAGGTTATGATTTCCAACC CTGACTCTGATGGATCAGCAACAGCCCTCTATCTAAATCTCTCCTGCCTTGATGAAGCGAAGTCCATTATTGGCTCAAGTCAGGCCGTCCCTTTTTTAGT CCAAATCCTTAAAGGTGAAACTGGAGTCCAATGCAAGCTCGATGCCCTTCATGCTCTCTATAACCTCTCCTCCCGATCCACCAATATTTCGAATCTCCTC TCAGCTGGCATCATCAGTGGCCTCCAATCCCTTCTTGCAGTACCTGGTGATCATGCATGGATAGAAAAATCCATAGCAGTTTTGATAAACTTAGCTTCTA GTCAATCAGCAAAAGATGAAATGCTATCTGCCCCTGGCCTTATTAGTGGGCTGGCAACGATTTTAGACACTGTTGAACCCATAGAGCAGGAGCAAGCTGT TGCTTGCCTTTTCCTTCTGTGCAATGGAAGTGAGAAGGGTAGTGAATTGGTCCTACAAGAAGGAGTGATACCTGCGCTGGTCTCAATCTCAGTGAATGGG ACCACGAGAGGGAAAGAGAAAGCACAGAAACTTCTGATGCTGTTTCGGGAGCAGCGGCAGCGAGATCAACCATCTGCTGAGGTGTGCTTTCAGCGAACCG AAAGTAGTTCCAAGTCCATGCCGGGTCCTGAATCAAAGCCGCAATGTAAACCTGTCTCAAGAAGAAAGATGGGGAAAGCTATAAGCTTCTTTTGGAAGAG CAAGAGCTACTCAGTTTACCAGTGTTAA
AA sequence Show only first row Show all	>Potri.008G177100.1 pacid=42806199 polypeptide=Potri.008G177100.1.p locus=Potri.008G177100 ID=Potri.008G177100.1.v4.1 annot-version=v4.1 MDITEVEENLFAASEAKLHGEMCKELSVVYCKISSIFPSLEAARPRSKSGIQALCLLHIALEKAKNVLKHCSECSKLYLAITGDSVLLKFEKARSALVDS LRRVEDIVPESIGCQILEIVSELEGTEFSLDPLEKQVGDEIIALLQQGRKFDDSNDNTELESFHQAATKLGITSSRAALTERRALKKLIERARVEEDKRK ESIVAYLLHLMKKYSKLFRSELTDDNDSQGSSPCSPTVQGSLEDGGPGGNGHAFERQLSKLSSFNFKPTYRKSGQMPLPPEELRCPISLHLMYDPVIIAS GQTYERICIEKWFSDGHETCPKTQQKLSHRCLTPNYCVKGLVASWCEQNGVPAPDGPPESLDLNYWRLAMSQFDSSNSRRSVESVRSGKLKGVKVVPLEE SGPIEEAEEKNEKLSSQQEDSMPEDAFGYNIFEIYKNFLAILNGDEELKKKCKIVEQVRLLLKDDEEARIFMGANGFVEALLQFLESAVRAGSPMAEEAG AMALFNLTVNNNRNNEMMLAAGAIPLLEVMISNPDSDGSATALYLNLSCLDEAKSIIGSSQAVPFLVQILKGETGVQCKLDALHALYNLSSRSTNISNLL SAGIISGLQSLLAVPGDHAWIEKSIAVLINLASSQSAKDEMLSAPGLISGLATILDTVEPIEQEQAVACLFLLCNGSEKGSELVLQEGVIPALVSISVNG TTRGKEKAQKLLMLFREQRQRDQPSAEVCFQRTESSSKSMPGPESKPQCKPVSRRKMGKAISFFWKSKSYSVYQC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24330			ARM repeat superfamily protein...		Potri.008G177100 [exp]	0	1
AT1G68910		WIT2	WPP domain-interacting protein...		Potri.010G135900 [exp]	2.23	0.8161
AT2G45680	TCP	TCP9	TCP family transcription facto...		Potri.002G152200 [exp]	7.68	0.8581
					Potri.016G041301 [exp]	8.24	0.8537
AT1G20440		AtCOR47, RD17, ...	cold-regulated 47 (.1)		Potri.002G013200 [exp]	15.00	0.8505
AT3G22120		CWLP	cell wall-plasma membrane link...		Potri.006G008500 [exp]	16.79	0.8135
AT2G41060			RNA-binding (RRM/RBD/RNP motif...		Potri.005G081600 [exp]	18.33	0.7925
AT1G01490			Heavy metal transport/detoxifi...		Potri.002G163400 [exp]	18.86	0.8326
AT4G27310	CO		B-box type zinc finger family ...		Potri.013G150500 [exp]	21.07	0.7665
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Potri.010G112200 [exp]	22.84	0.8089
					Potri.018G001950 [exp]	23.66	0.8116

Compare expression of checked genes

Potri.008G177100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.