Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67540 83 / 3e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G057800 [exp] 452 / 2e-160 AT1G67540 87 / 1e-19 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006428 [exp] 125 / 4e-34 AT1G67540 59 / 1e-10 unknown protein Lus10037003 [exp] 113 / 8e-29 AT1G67540 64 / 1e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G177300.1 pacid=42808829 polypeptide=Potri.008G177300.1.p locus=Potri.008G177300 ID=Potri.008G177300.1.v4.1 annot-version=v4.1 ATGGAATCAACAGCAGGAACCTGCAGAATGAGTGGTAGGCGTCGTCCGTTGCATGCATGTGGAGTTTCTTTCATGGAAATCACTCGAAAAGCTTACAGAG AAGCCAAAGAAATTAATGGACCGTTAGGTTTAGTGACAAAGAAGTTGATCAGGTTAGCTTCGTTTGCTTCCCTTCTTGAATGTGTCCTGCGGTATGAGTG TCTCTTCCTGGCAATCCTCTCTTTTGTGGACGATCATATAATATTAGCCCTTGAAAGAAAGGCTGAGGGTATTTTCCCACCATCAAGATATGTGTTCAAC AAGGTTGACAAGCTCGTCCAAATTGTAGAAACCCTTCCAGCAAAATTTGATTCTGCTGTTAACAAGTTTCCCATATTAATCCACCAAATTCCATTTCTAG ATTGGGCGCTGTCATGTGCTATCTGTTGGCTGAACTTTTGGTTATCTATCCTGACTCATTGGGGATCAGAAACTACAAAAGAAAAGGAGATCGTGGTCGA TATAAACTGTAACAACAACAGTATTGAACAGACAATTGTTCAAGAAGAAGATAGTAACGCAATAGAGTTCCCAAATCACGATGGAAATGAAACAAAGGTA TGTTTCTGTCCCATATCTGCAACATCAGGATCGGAATCTCAGACAGGTAGTCCGAAAGTTGTGAGATGCACATACAAGGATGCACTGGAAAAAGTTGTGA AATCCACAAATAAGGATGCACTAGAGAAGGGGACAGGAGAAAGCATACAGAACTCAGAGGAGAGCACAAAGCAGATGATCCAATCCACTGTAATTAGCAG TGAAGAAACTAGTAGCACAGAGCAGATGATCCAATCCACTGTTAGCGGTGAAGAAACTAGCACTAAAGGTGAGACAAATGAGAGCATGAAACCGAAAGAA TGTATTGCTGAGGAGGAGACAGAAGAAGCGAGGGCTAGCAAGGAAGCAACTGGAGAAGGAGGGGATAATACTGCAGTCATCGAAGGTAATCTAATCAGTT TGCCGGCAAATAAAAAGCTGACAAGCATCAGCAAGGAAGATCCAATTTTAGCACTATTCGAATCTGCTTGGCACATATAA
AA sequence Show only first row Show all	>Potri.008G177300.1 pacid=42808829 polypeptide=Potri.008G177300.1.p locus=Potri.008G177300 ID=Potri.008G177300.1.v4.1 annot-version=v4.1 MESTAGTCRMSGRRRPLHACGVSFMEITRKAYREAKEINGPLGLVTKKLIRLASFASLLECVLRYECLFLAILSFVDDHIILALERKAEGIFPPSRYVFN KVDKLVQIVETLPAKFDSAVNKFPILIHQIPFLDWALSCAICWLNFWLSILTHWGSETTKEKEIVVDINCNNNSIEQTIVQEEDSNAIEFPNHDGNETKV CFCPISATSGSESQTGSPKVVRCTYKDALEKVVKSTNKDALEKGTGESIQNSEESTKQMIQSTVISSEETSSTEQMIQSTVSGEETSTKGETNESMKPKE CIAEEETEEARASKEATGEGGDNTAVIEGNLISLPANKKLTSISKEDPILALFESAWHI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67540			unknown protein		Potri.008G177300 [exp]	0	1
					Potri.005G193600 [exp]	17.88	0.8236
					Potri.016G003750 [exp]	22.51	0.8394
AT1G74780			Nodulin-like / Major Facilitat...		Potri.012G072101 [exp]	24.89	0.8222
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Potri.001G407800 [exp]	28.87	0.8282
AT5G52390			PAR1 protein (.1)		Potri.015G144800 [exp]	30.29	0.7928
					Potri.013G023500 [exp]	44.21	0.7616
AT4G01970		RS4, ATSTS	raffinose synthase 4, stachyos...		Potri.014G118400 [exp]	54.49	0.7971
					Potri.011G146000 [exp]	75.19	0.7911
AT5G05340			Peroxidase superfamily protein...		Potri.014G143200 [exp]	118.32	0.7429	Pt-PRX1.11
AT3G60530	GATA	GATA4	GATA transcription factor 4 (....		Potri.002G142800 [exp]	127.71	0.7388

Compare expression of checked genes

Potri.008G177300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.