Plant FIBer expression Database

Potri.008G177350 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G177350.1 pacid=42806664 polypeptide=Potri.008G177350.1.p locus=Potri.008G177350 ID=Potri.008G177350.1.v4.1 annot-version=v4.1
ATGTTTGGGCTGAAAAGCATCAGACATCAGATATTTTACAATAGTTTTAGAATAGATCAGCTTGTAGTCTTGCGTTTGCAGATCAAAGTGGCAGGAGAGA
GTCCATACAACCGATCGAGATTGGTTTCCTGCGTTAAGGCTCCTTGTGGTTTCATTGAAGTTCTTCTATATATGGGGAATCCAAATAATGCTGGAATGAG
TGGTTTGATCGGGGATGAGGAGGGGAAGTGCATTGCAGGTTTCCATAGCTACAGTGGGTGGACAACAAGCATAATGGTGGAGGCTGATTCCCTTGAGGCA
GTTCATTTGATTTCCGGTAACAGTGGTCCTTTTCATCCTTGTCATGCTCTGTTGGAGGATATAAATTCTTTGCTAAATCGTAGCTTGTTTCACACATTGA
GGGAAGGGAAGGGAAGGGAATCGATGCGCAGGCTTTCTTGCCAAGCTAGGGTCGACCTCTCAGGCTCCCAGTTTTGTTTGGGAAATTCCTCCTTCAGGTC
TTCATACTGTTTTGTTAGGAGATGGTTTGGGTAG
AA sequence
>Potri.008G177350.1 pacid=42806664 polypeptide=Potri.008G177350.1.p locus=Potri.008G177350 ID=Potri.008G177350.1.v4.1 annot-version=v4.1
MFGLKSIRHQIFYNSFRIDQLVVLRLQIKVAGESPYNRSRLVSCVKAPCGFIEVLLYMGNPNNAGMSGLIGDEEGKCIAGFHSYSGWTTSIMVEADSLEA
VHLISGNSGPFHPCHALLEDINSLLNRSLFHTLREGKGRESMRRLSCQARVDLSGSQFCLGNSSFRSSYCFVRRWFG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.008G177350
[exp]
0 1
AT3G53230 ATPase, AAA-type, CDC48 protei... Potri.016G091600
[exp]
21.49 0.6161 Pt-CDC48.2
AT2G04305 Magnesium transporter CorA-lik... Potri.009G079600
[exp]
21.72 0.6130
AT5G62530 ATP5CDH, ALDH12... ARABIDOPSIS THALIANA DELTA1-PY... Potri.015G064200
[exp]
33.49 0.6009 FIS1.3
AT1G11260 ATSTP1, STP1 sugar transporter 1 (.1) Potri.011G042100
[exp]
74.47 0.5372
AT5G10780 unknown protein Potri.018G016800
[exp]
97.36 0.5270
AT1G72430 SAUR-like auxin-responsive pro... Potri.001G164300
[exp]
97.94 0.5276
AT4G35530 phosphatidylinositolglycan-rel... Potri.018G026700
[exp]
114.47 0.5152
AT3G10330 Cyclin-like family protein (.1... Potri.006G048400
[exp]
139.99 0.5416 TFIIB1.2
AT2G03270 DNA-binding protein, putative ... Potri.006G054600
[exp]
178.19 0.5245
AT5G04870 AK1, ATCPK1, CP... calcium dependent protein kina... Potri.009G165700
[exp]
248.63 0.4921

Potri.008G177350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.