Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43230 565 / 0 unknown protein AT3G01810 523 / 3e-170 unknown protein AT3G57780 481 / 4e-157 unknown protein AT2G42320 473 / 3e-154 nucleolar protein gar2-related (.1.2) AT5G06930 363 / 6e-112 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G057700 [exp] 1252 / 0 AT5G43230 560 / 0.0 unknown protein Potri.001G333200 [exp] 592 / 0 AT3G01810 652 / 0.0 unknown protein Potri.016G051500 [exp] 516 / 4e-169 AT2G42320 645 / 0.0 nucleolar protein gar2-related (.1.2) Potri.006G056800 [exp] 507 / 2e-165 AT2G42320 618 / 0.0 nucleolar protein gar2-related (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037001 [exp] 711 / 0 AT3G01810 583 / 0.0 unknown protein Lus10041590 [exp] 541 / 5e-176 AT3G01810 603 / 0.0 unknown protein Lus10022341 [exp] 530 / 7e-172 AT3G01810 605 / 0.0 unknown protein Lus10015804 [exp] 491 / 5e-166 AT5G43230 371 / 2e-122 unknown protein Lus10011304 [exp] 489 / 3e-159 AT2G42320 688 / 0.0 nucleolar protein gar2-related (.1.2) Lus10040502 [exp] 483 / 1e-156 AT2G42320 685 / 0.0 nucleolar protein gar2-related (.1.2) Lus10015805 [exp] 248 / 8e-71 AT3G01810 160 / 5e-41 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF10358 [poplar] [flax] NT-C2 N-terminal C2 in EEIG1 and EHBP1 proteins
Representative CDS sequence Show only first row Show all	>Potri.008G177500.2 pacid=42807949 polypeptide=Potri.008G177500.2.p locus=Potri.008G177500 ID=Potri.008G177500.2.v4.1 annot-version=v4.1 ATGGTTCTCGGGCTTAGATCAAAGAACCGAAAAGGTACTTCAGTGCAGGTTGATTACACCATTCATGTACAAGAAATCAAGCCTTGGCCCCCATCACAGT CTCTTAAATCTGTTCAGTCCTTGTTGCTTCAATGGGAAAATGGTGATCAGAGTTCTGGTTCCTTCACTTCTAATGTTGGAGATGGGAAAGTTGAATTTAT CGAGTCTTTTAGGCTTTCAGCTACTTTATGTAAGGAAGTGTCCAGAAAAGGCACTGCTCGAGACAGTTTCCTGAAGAACTACTTAGAGTTTAACTTTTAT GAATCTCGAAAGGACAAGGCAATGAAAGGTCAACTCCTGGGATCGGCAGTCATAAACCTTGCAGATTATGGAATCATCATGGATGCTGTAACCATAAATG CCCCAATTAATTTCAAGAAATCTTCTAGGAGCACGGTGCCGGCAGTTCTTTATGTAAATATTCAGCCATTTGACAGAGATAAGTCCACCTTGTCAAAAGA AGTGTCACTGGACAAGGATGGAAGTGAAACTGTTTCAGAAGTGGCAAATGAAGGGAATGACAATGAAATTGAGATTGCCTCATTCACTGATGATGACGAT GTTTCCTCACATTCATCACTGACTGTATCCTCTTCTGCATTAGAGTCTATTGGAGGATCTCCAGGTCAATCTCACAAGAAGGGATCACGGACAGCAAACA GTGGCACAAGAAGGATCGATGAGGAGCCTGCATTACCCTCAGGTGTAGCACCTTCAAACCCAGATGTGAACTCAGCATCTCAAGGATTTAAACATCTGAA TGGAGCAGCTTCTCCTTCATTGCCTACAGACATGCCCGCTAATCTGCTAAATCCTGTAAATAATCTTGCAGAAACTAATATGTTGTCAGATGACTGTAGT CAGGTGAAGGACTCAAATTGTGTAAGCTTGGAAGAGTCTCGTTCTAAGCAAGGTGCTGATAGAAAAGCCTGGAGACATGAAACAAGTGGACCAGAGAATC CTACAACTAATAATTTAAATGGTGATCTTATGGATGGGAAAGAGAAAAAAGAGCTGGATGACAAGGAACGGGGTTCAGTTATTTTAGAGGTAGAGAAACC TTCTCTGGAGGAAAAATTACCTGGTCAATTACCTGAAGATGCGTCAAAAAAGCAAGCCAAATTAAGGAGCAATACTCTTGCACTCAACAGAACAGCGATT GGAGTGCAGGGTACCCGTAGAGATAAAATGAAGCACCTGAAGTCTGTTCAATTACAGTTTCACTCAGCTGAAGGCGATGATCCCTTCATCAATAGAAAAT TGATAGAGAAGCCAAAGAAGATTAATGTTTCTGAAAATGTTAATAAAGGGGCCAAGGGTTATGAACACAGTGAAAAGGAAAAATCAAGAAAAGGCTTCTC TGACAATGAAGGTGAATCAAATTCTGAAGTTGAAATACTCGAGGAAGAGTTAAGTGGAGCTGCTGCAGAGGATGATCTTGCTGAGCAAGGAAACTCCACA AAAAAGTTCCAGCTAATGGAGAAGGAAAAGAAAATTGATCTTCCTGAAAATTTAAATAAAGTTGACATGAGTTATACACCAAGTAAAAGGGAAGAACAAA CAGAAAGCAACTTTTCTGGAAACAAAGTTGAACTGCAGTTGAAAGTTGAAATGCTTGAGGAGGAACTGATGGAAGCTGCGACTGTTGAGGTTGGCCTTTA CTCAGTTGTTGCCGAGCATGGAAGTTCTATAAACAAGGTCCTAGCTCCAGCAAGGCGCCTTTCAAGGTTCTATCTTCATGCTTGCAAGGCAAGGTCCCGG GTCAAGAGGGCAAATTCAGCTAGAGCTATTATCTCAGGATTAATTTTGGTTTCTAAAGCATGTGGAAATGATGTTCCAAGGTTAACTTTCTGGTTGTCAA ATTCAATTGTGCTAAGAGCAATTGTAACCCAGGATGTTGAGAAGTTGCAGCTTGCTTCGGTACCATCCATCATTAACAATGGTGGTCCAAAGGGCAGGCA TGAATCCTCTCCTGGTGAAGTAGAGAAAACTGATCGAACAGAAAGTTCTGACGAGTGGGCAGAACCTCAGCCATGTATAGCAGCATTAAAGAAGGTCGAA GCTTGGATCTTCTCCCGAATTGTCGAGTCAGTTTGGTGGCAGACTCTGACACCACATATGCAGTCCACAGCTGTGAAGAGCTCACACTCAAGGAAGACCA ATGCTAGGAGGCATGGATTGGGTGATCAAGAACAGGACAATTTTGCTATTGATTTATGGAAGAAGGCTTTCAGGGATGCATGTGAAAGGCTTTGTCCGGT TCGAGCTGGGGGGCATGAATGTGGTTGCTTGCCTGTGCTGTCTAGATTGGTAATGGAACAGTTGGTGGGTAGACTAGATGTGGCCATGTTCAATGCTATA CTTCGGGAATCAGCTGAAGAGATGCCAACAGATCCTGTTTCTGACCCAATCAGTGATCCTAAGGTTCTTCCAATCCCAGCTGGAAATTCAAGCTTTGGGG CTGGTGCACAATTGAAAAATGCTGTTGGAAATTGGTCCAGATGGCTCACAGATTTATTCGGTATTGATGATAATGACTCTCCAGAAGAGAAGGATGAACT TGATAGCAGCAGGCGTGAATGTGAGACATCCTTCAAGGCTTTCCAACTCCTGAATGCCTTGAGTGATCTCATGATGCTTCCATTTGAAATGCTCGGAGAT AGGTCAACTAGAAAAGAGGTATGCCCTACGTTTGGCGTGCCAATAATCAATAGGGTTCTTGACAATTTTGTCCCAGACGAATTCAACCCTGACCCTGTCC CAGAGACGATTCTTGAGGCCTTGGATTCTGAGGATCTTGCTGATTCTGGGGAGGAGTCTATCACAAACTTCCCATGTATTGCAGCTCCCACAATCTACTC ACCACCTCCTGCAGCATCACTAACAAATATAATAGGAGAGGTGGGAGGCCAAACTCTGCAGAGGAGCAGATCAGCAATGCTTAGAAAGTCATACGCTAGT GATGATGAGCTTGATGAGCTGGATTCACCCATGACTTCCATCATTGACAGCTCCAAGGTTTCTCCTACATCTACAGCATGGAATTGGATGCAAAAGGGAA AGGCAGGCCGGAAAGTTGTTAGATATCAACTCCTCCGGGAGGTATGGAAGGATGGTGAATAG
AA sequence Show only first row Show all	>Potri.008G177500.2 pacid=42807949 polypeptide=Potri.008G177500.2.p locus=Potri.008G177500 ID=Potri.008G177500.2.v4.1 annot-version=v4.1 MVLGLRSKNRKGTSVQVDYTIHVQEIKPWPPSQSLKSVQSLLLQWENGDQSSGSFTSNVGDGKVEFIESFRLSATLCKEVSRKGTARDSFLKNYLEFNFY ESRKDKAMKGQLLGSAVINLADYGIIMDAVTINAPINFKKSSRSTVPAVLYVNIQPFDRDKSTLSKEVSLDKDGSETVSEVANEGNDNEIEIASFTDDDD VSSHSSLTVSSSALESIGGSPGQSHKKGSRTANSGTRRIDEEPALPSGVAPSNPDVNSASQGFKHLNGAASPSLPTDMPANLLNPVNNLAETNMLSDDCS QVKDSNCVSLEESRSKQGADRKAWRHETSGPENPTTNNLNGDLMDGKEKKELDDKERGSVILEVEKPSLEEKLPGQLPEDASKKQAKLRSNTLALNRTAI GVQGTRRDKMKHLKSVQLQFHSAEGDDPFINRKLIEKPKKINVSENVNKGAKGYEHSEKEKSRKGFSDNEGESNSEVEILEEELSGAAAEDDLAEQGNST KKFQLMEKEKKIDLPENLNKVDMSYTPSKREEQTESNFSGNKVELQLKVEMLEEELMEAATVEVGLYSVVAEHGSSINKVLAPARRLSRFYLHACKARSR VKRANSARAIISGLILVSKACGNDVPRLTFWLSNSIVLRAIVTQDVEKLQLASVPSIINNGGPKGRHESSPGEVEKTDRTESSDEWAEPQPCIAALKKVE AWIFSRIVESVWWQTLTPHMQSTAVKSSHSRKTNARRHGLGDQEQDNFAIDLWKKAFRDACERLCPVRAGGHECGCLPVLSRLVMEQLVGRLDVAMFNAI LRESAEEMPTDPVSDPISDPKVLPIPAGNSSFGAGAQLKNAVGNWSRWLTDLFGIDDNDSPEEKDELDSSRRECETSFKAFQLLNALSDLMMLPFEMLGD RSTRKEVCPTFGVPIINRVLDNFVPDEFNPDPVPETILEALDSEDLADSGEESITNFPCIAAPTIYSPPPAASLTNIIGEVGGQTLQRSRSAMLRKSYAS DDELDELDSPMTSIIDSSKVSPTSTAWNWMQKGKAGRKVVRYQLLREVWKDGE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43230			unknown protein		Potri.008G177500 [exp]	0	1
AT3G28450			Leucine-rich repeat protein ki...		Potri.017G074400 [exp]	1.41	0.8968
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Potri.001G279500 [exp]	1.73	0.8945
AT1G06660		JASON	JASON, unknown protein		Potri.005G205700 [exp]	2.44	0.9050
AT5G14230			unknown protein		Potri.001G333600 [exp]	6.48	0.8055
AT4G14220		RHF1A	RING-H2 group F1A (.1)		Potri.010G092300 [exp]	7.34	0.8199
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.016G113600 [exp]	7.87	0.8159	AUX1.1
AT4G34500			Protein kinase superfamily pro...		Potri.009G115600 [exp]	10.09	0.7644
AT1G13570			F-box/RNI-like superfamily pro...		Potri.010G134200 [exp]	10.48	0.8521
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Potri.003G059200 [exp]	12.48	0.8607
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.001G401300 [exp]	13.41	0.8296

Compare expression of checked genes

Potri.008G177500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.