Plant FIBer expression Database

Potri.008G177900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67550 1345 / 0 URE urease (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015814
[exp]
888 / 0 AT1G67550 857 / 0.0 urease (.1)
Lus10036993
[exp]
829 / 0 AT1G67550 817 / 0.0 urease (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0034 Amidohydrolase PF00449 Urease_alpha Urease alpha-subunit, N-terminal domain
CL0034 PF00699 Urease_beta Urease beta subunit
CL0034 Amidohydrolase PF01979 Amidohydro_1 Amidohydrolase family
Representative CDS sequence
>Potri.008G177900.1 pacid=42806615 polypeptide=Potri.008G177900.1.p locus=Potri.008G177900 ID=Potri.008G177900.1.v4.1 annot-version=v4.1
ATGAAACTGACACCAAGAGAGGTGGATAAGCTAGGACTCCACAATGCTGGATTTCTCGCACAGAAACGCCTTGCTCGAGGCCGCAAGCTTAATTATACCG
AGGCCGTCGCTCTTATTGCCTCTCAGATTTTGGAATTTGTTCGCGATGGTGACAAGAGTGTAGCTGAATTGATGGACATTGGGAAACAGATACTTGGAAG
GAGACAAGTTCTTCCAGCAGTTCCACATCTTCTCGATACTGTACAGGTTGAAGGGACATTTCCTGACGGGACCAAGTTAATCACTGTACATAATGCGATT
GCTAGTGAAAATGGGAATCTGGAGCTAGCTTTACAGGGTTCTTTTCTTCCAGTTCCTTCTCTCGACAAATTTCCTGCAATAGAAGATAATGAAATTCCTG
GTGCAATAATCTTTGGAGACGGGAATGTCATAATTAATTCTGGAAGGAAAGCAGTAACCCTCAAAGTCATTAACACTGGAGACAGGCCAATTCAGGTAGG
CAGCCACTATCATTTTATCGAGACAAATCGGAGTTTACTTTTTGATCGAAGAAAAGCACATGGCATGCGCTTGAACATCCCAGCTGGGACAGCCATACGA
TTTGAGCCAGGGGAAAGTAAAAGTGTAGTGCTTGTAAGCATTGGAGGTAAACAGGTGATCAAAGGTGGAAATGGCATTGTTGATGGGCCTGTTGATCATG
AAAACTGGACCAATATCATGGGAAACATAAGGAGGAGAGAATTTGGGAATCGAGAAGAAGAAAATGCTAGTGAAGGTGTAATTGGAGAAGGTTCTGCATT
CAACAATACAATTTCTCGCGAGGCTTATGCTAACATGTATGGCCCTACTGCTGGTGACAAAATTCGTCTTGGTGATACCAACCTGTATGCTGAAATTGAA
AGAGATTTTGCTTTTTATGGTGATGAATGTGTCTTTGGAGGTGGAAAAGTTATAAGGGATGGAATGGGTCAGTCATGCGGACATCAACCAGCTGACTCAC
TTGATACCGTTATAACAAATGCTGTGGTCATTGATTATAGTGGAATTTACAAGGCAGATATTGGTATTAAGGATTATCTTATTCATGCTATTGGAAAATC
AGGAAATCCAGATGTCATGAATGTTCCCTCTGATATGACCATTGGGGTTAACACCGAGGTTATTGCGGGGGAAGGAATGATTGTAACTGCAGGGGGCATA
GACTGTCATGTGCACTTCATATGCCCTCAACTTGCATTTGAGTCGATATCAAGTGGCATTACAACACTTGTGGGAGGTGGAACAGGACCTGCTGATGGGA
CACGTGCAACGACATGTACTCCTGCTCCTTCACATATGAAATTAATGCTGCAGTCTACTGATGACCTGCCTCTAAACTTTGGCTTCACTGGAAAAGGTAA
TGCTGCCAAACCTGAGGAGCTACATAAAATCATCAGGGCTGGAGCAATGGGACTGAAGCTTCACGAGGACTGGGGAACTACTCCTGCTGCAATAGACAAT
TGTTTGACTGTTGCAGATGAATATGACGTTCAGGCCAATATCCATACTGATACCTTGAATGAATCTGGATTCGTGGAAGATACTATTGCTGCATTTAAAG
GAAGAACTATCCATACTTATCATAGTGAAGGTGCAGGTGGTGGTCATGCTCCAGATATTATCAAAGTATGTGGTGTAAAAAATGTCCTGCCCTCATCAAC
GAACCCTACACGGCCATATACTTCCAATACTATAGATGAGCATCTAGATATGCTGATGGTCTGCCATCACCTTGATAAAAACATTCCAGAAGATGTAGCT
TTTGCCGAATCAAGAATAAGGGCTGAAACAATTGCTGCAGAAGACATATTACATGATATGGGAGCGATTAGCATTATATCTTCCGATTCACAGGCCATGG
GCCGCATTGGAGAGGTCATAAGTAGAACATGGCAAACTGCTCACAAGATGAAATCACAAAGGGGATTGATTGGGCCTGGTGGATCAGACAATGACAACTT
TCGCATCAGAAGATACATTGCAAAGTACACAATAAACCCTGCAATAGCTAACGGGCTTGCTAAGTTTGTTGGTTCAGTTGAGGTAGGGAAGTTAGCTGAT
CTTGTTTTATGGAAGCCGTCTTTCTTTGGGGCAAAACCAGAAATGGTGATTAAAGGTGGTGCTATTGCATGGGCTAACATGGGGGATGCAAATGCAAGCA
TCCCTACACCTGAACCTGTGATTTCAAGGCCAATGTTTGGAGCATTTGGTAAGGCTGGGAGCACTCACTCCATTGCTTTTGTCAGCAAGGAAGCTGCAGA
CAATGGGATCAAGGCAGAGTACGAACTCGACAAGAGAGTGGAAGCTGTGGGTGGTGTTAGGAAACTCACCAAACTCGACATGAAACTCAATGATGCCCTT
CCAGATATTACAGTGGATCCAGAAACATACACTGTAACTGCAGATGGCGAGGTTCTTACATGCCCCGCTGCCACCACAGTTCCCCTTTCACGTAATTATT
TTCTATTTTAG
AA sequence
>Potri.008G177900.1 pacid=42806615 polypeptide=Potri.008G177900.1.p locus=Potri.008G177900 ID=Potri.008G177900.1.v4.1 annot-version=v4.1
MKLTPREVDKLGLHNAGFLAQKRLARGRKLNYTEAVALIASQILEFVRDGDKSVAELMDIGKQILGRRQVLPAVPHLLDTVQVEGTFPDGTKLITVHNAI
ASENGNLELALQGSFLPVPSLDKFPAIEDNEIPGAIIFGDGNVIINSGRKAVTLKVINTGDRPIQVGSHYHFIETNRSLLFDRRKAHGMRLNIPAGTAIR
FEPGESKSVVLVSIGGKQVIKGGNGIVDGPVDHENWTNIMGNIRRREFGNREEENASEGVIGEGSAFNNTISREAYANMYGPTAGDKIRLGDTNLYAEIE
RDFAFYGDECVFGGGKVIRDGMGQSCGHQPADSLDTVITNAVVIDYSGIYKADIGIKDYLIHAIGKSGNPDVMNVPSDMTIGVNTEVIAGEGMIVTAGGI
DCHVHFICPQLAFESISSGITTLVGGGTGPADGTRATTCTPAPSHMKLMLQSTDDLPLNFGFTGKGNAAKPEELHKIIRAGAMGLKLHEDWGTTPAAIDN
CLTVADEYDVQANIHTDTLNESGFVEDTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLDKNIPEDVA
FAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKSQRGLIGPGGSDNDNFRIRRYIAKYTINPAIANGLAKFVGSVEVGKLAD
LVLWKPSFFGAKPEMVIKGGAIAWANMGDANASIPTPEPVISRPMFGAFGKAGSTHSIAFVSKEAADNGIKAEYELDKRVEAVGGVRKLTKLDMKLNDAL
PDITVDPETYTVTADGEVLTCPAATTVPLSRNYFLF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G67550 URE urease (.1) Potri.008G177900
[exp]
0 1
AT4G23180 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-li... Potri.007G120900
[exp]
1.00 0.8973
AT5G65210 bZIP TGA1 bZIP transcription factor fami... Potri.005G082000
[exp]
5.00 0.8133 STGA1.3
AT3G62150 ABCB21, PGP21 ATP-binding cassette B21, P-gl... Potri.002G187500
[exp]
6.70 0.7875
AT4G40070 RING/U-box superfamily protein... Potri.008G025300
[exp]
8.12 0.7504
AT3G23430 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosp... Potri.010G069000
[exp]
9.79 0.7986
Potri.001G093650
[exp]
12.28 0.7023
AT1G08320 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding pr... Potri.009G164300
[exp]
22.44 0.7635
AT1G51940 protein kinase family protein ... Potri.015G081601
[exp]
23.43 0.8299
AT5G37730 unknown protein Potri.004G089700
[exp]
23.57 0.7050
AT1G74770 zinc ion binding (.1) Potri.015G066600
[exp]
30.98 0.7644

Potri.008G177900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.