Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67560 1155 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G72520 954 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G17420 934 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT3G45140 784 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G55020 705 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 647 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G057100 [exp] 1665 / 0 AT1G67560 1144 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.001G167700 [exp] 983 / 0 AT1G17420 1444 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.009G022400 [exp] 869 / 0 AT3G45140 1008 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015500 [exp] 863 / 0 AT3G45140 975 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.017G046200 [exp] 858 / 0 AT3G45140 979 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015400 [exp] 852 / 0 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015300 [exp] 811 / 0 AT3G45140 943 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.003G067600 [exp] 755 / 0 AT1G17420 1000 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.005G032400 [exp] 678 / 0 AT1G55020 1308 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006429 [exp] 1155 / 0 AT1G67560 1034 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10015666 [exp] 980 / 0 AT1G17420 1381 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10013151 [exp] 971 / 0 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10008113 [exp] 968 / 0 AT1G17420 1396 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10002545 [exp] 809 / 0 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031810 [exp] 807 / 0 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10041646 [exp] 802 / 0 AT3G45140 939 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002547 [exp] 801 / 0 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10039094 [exp] 793 / 0 AT3G45140 946 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10032087 [exp] 769 / 0 AT3G45140 894 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [poplar] [flax] Lipoxygenase Lipoxygenase CL0321 [poplar] [flax] PLAT PF01477 [poplar] [flax] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Potri.008G178000.2 pacid=42806355 polypeptide=Potri.008G178000.2.p locus=Potri.008G178000 ID=Potri.008G178000.2.v4.1 annot-version=v4.1 ATGTATGCAATGAAACGAGTATATTCTCCTTTCAAGTCAGAGCTCACTTTCCGACTATCTCCGGCGACATCCAGAGCCTGGAAAGATGGTTTTTTCTGGA AAACCCGAGTTCCATCTGGATCAAAGGTTAGTTGTACGCCCGGGTCAATCCGAGCAGTGATAAGCAGTGATGACAAGGCTTTGGAGCCTTCTAGTAAGGA AGCTAGTAATAAAGAAGTCGATGAGATAGTGTTCTCGAGTTCTAGTGATAAATTAGGAAAAGGAGGGATAGATGTGAGGGCAGTGATCACTATAAGGAAG AAGATTAAAGAGAAGATCAATGAAAAGATTGAAGATCAATGGGAATACTTTGTTAATGGGATTGGTAAAGGGATCCTGATTCAACTTGTCAGTGAGGAGA TTGACCCTGAAACCAATTCAGGGAAGAGTGTACAGGCTTCTGTGAGGGGCTGGATACCAAAGCCATCAAATAATGAGCATATTATTGAATACGCAGCTGA TTTCACTGTTCCCTTCGATTTCGGGAATCCTGGGGCAGTGCTTGTTACCAATCTTCATGGCAAGGAGTTCTACTTGATGGAGATTGTAGTTCATGGTTTT GATGCAGGCCCCATTTTCTTCCCTGCAAATACGTGGATTCATTCGAGCAAAGATAATCCTGATAGCAGAATTATCTTCAGAAATCGAGCATATCTACCAT CTCGAACACCACCTGGTATTAAAGATCTAAGGCGCGAAGACTTGCTCAGTCTCCGTGGTAATGGAAAAGGCGAGAGAAAGCCTCATGATAGAATTTATGA TTATGCTCTTTATAACGATTTAGGTAATCCTGACAAGGATGACGAACTTGCTAGACCGGTCCTGGGCGGTGAAAAGTGGCCTTATCCTAGGCGCTGTAGA ACTGGTAGACCTCCAACCAAGAAAGATCCAAAATGTGAAACTAGAATCGAAAAGCCACATCCAGTATATGTACCTAGGGATGAAACTTTCGAGGAGATCA AGCGGAACACTTTCTCTACTGGAAGGTTGAAAGCTCTGCTTCACAATCTTATTCCAGCTATTGCTGCTACACTGTCAAGTTCAGACATTCCCTTCACGTG CTTCTCTGATATTGATAAGCTATATAATGATGGTTTTATTTTGAAAACTGAGGAGCTAAGTGAAATAGTCCAGAATCCCTTTTTGGGAAATTTTATGAAG CGGGTTCTTAGTGTGAGTGAAAGGTTGCTGATATATGATATTCCAGCTGTTATAAAGCGGGATAGATTTGCATGGTTGCGTGATAGTGAGTTTGCTCGCC AGACTTTGGCTGGGGTGAATCCAGTGAACATTGAGATTTTAAAGGAATTTCCGATTCTCAGCAAACTAGATCCTGCTGTGTATGGCCCTCCAGAATCAGC AATCACTGAGGAATTAATTGAGCATGAACTTCATGGAATGAGTGTAGAGAAGGCAATTGAAGAGAAAAGGTTATTTATCCTCGATTACCATGATATGCTT TTGCCATTTATCGAGAAGATGAACTCCTTGCCAGGAAGAAAAGCTTATGCATCAAGGACTGTTTTCTTCTATGATCAGGCTGGTATTCTAAGGCCAATAG TTATTGAGCTTTCACTTCCCCCATCACCCTCTTCACCTTGCAACAAACATGTTTACATTCATGGGCCTGATGCCACGACACATTGGATCTGGAAACTAGC CAAAGCTCATGTCTGCTCAAATGATGCTGGTGTTCATCAACTAGTAAATCACTGGTTGAGGACTCATGCCTGCATGGAGACTTATCTAATTGCAACTCAC AGGCAGCTTAGTGCAATGCACCCCATTTACAAGTTGCTCCATCCCCATACACGTTATACACTAGAAATTAATGCACTTGCACGGCAGAGCTTAATAAATG GAGGAGGAATAATTGAGGCCTGTTTCAGTCCTGGAAAGTATGCCATGGAGGTTAGCTCTGCAGCCTACAAGAATATGTGGCGGTTTGACATGGAGGCATT GCCAGCAGATCTTGTTCGCAGGGGAATGGCAGTGGAGGATCCTTCGATGCCTTGTGGAGTGAGGCTTGTGATAGAAGACTACCCTTATGCTTCAGACGGA CTCCTCATTTGGTCAGCCATAAAAGAATATGTAGAATCTTATGTTGATCACTTCTACTCTGAGCCTAACTCTGTCACATCTGATATTGAGCTCCAAGCCT GGTGGAATGAGATAAAAAACAAGGGTCATTTTGACAAGAGGAGCGAACCATGGTGGCCTAAACTCGATACCAAAGAAGATGTATCTGGCATACTTACTAC AATGATCTGGATTGCATCAGGGCAGCATGCTGCTATAAACTTTGGGCAGTACCCCTTTGGAGGGTATGTGCCTAGTCGTCCTACCCTCATGAGAAAACTC ATCCCGCTAGAAAATGAACATGATCATGAAAAGTTCATCCGAAACCCTCAGCATACTTTCCTGTCATCTTTGCCAACTCAACTTCAAGCCACCAAAATAA TGGCTGCTCAGGACACTCTGTCGACTCACTCCCCAGATGAAGAGTACTTGGGTCAGGTAAGCCACCTGCACAGCCATTGGATCAATGATCACGAAATAGT AGAATTGTTCAATAGATTTTCTGCTCGATTAGAGGAGATTGAAGGAATAATAAACTTGAGAAATAAGGATGCCCGCCTTAAAAACAGAAGCGGTGCAGGT GTTCCACCATATGAACTGCTCGTTCCCACTTCAGGCCCTGGAGTAACAGGTCGAGGAATCCCCAATAGCATTTCTATCTAA
AA sequence Show only first row Show all	>Potri.008G178000.2 pacid=42806355 polypeptide=Potri.008G178000.2.p locus=Potri.008G178000 ID=Potri.008G178000.2.v4.1 annot-version=v4.1 MYAMKRVYSPFKSELTFRLSPATSRAWKDGFFWKTRVPSGSKVSCTPGSIRAVISSDDKALEPSSKEASNKEVDEIVFSSSSDKLGKGGIDVRAVITIRK KIKEKINEKIEDQWEYFVNGIGKGILIQLVSEEIDPETNSGKSVQASVRGWIPKPSNNEHIIEYAADFTVPFDFGNPGAVLVTNLHGKEFYLMEIVVHGF DAGPIFFPANTWIHSSKDNPDSRIIFRNRAYLPSRTPPGIKDLRREDLLSLRGNGKGERKPHDRIYDYALYNDLGNPDKDDELARPVLGGEKWPYPRRCR TGRPPTKKDPKCETRIEKPHPVYVPRDETFEEIKRNTFSTGRLKALLHNLIPAIAATLSSSDIPFTCFSDIDKLYNDGFILKTEELSEIVQNPFLGNFMK RVLSVSERLLIYDIPAVIKRDRFAWLRDSEFARQTLAGVNPVNIEILKEFPILSKLDPAVYGPPESAITEELIEHELHGMSVEKAIEEKRLFILDYHDML LPFIEKMNSLPGRKAYASRTVFFYDQAGILRPIVIELSLPPSPSSPCNKHVYIHGPDATTHWIWKLAKAHVCSNDAGVHQLVNHWLRTHACMETYLIATH RQLSAMHPIYKLLHPHTRYTLEINALARQSLINGGGIIEACFSPGKYAMEVSSAAYKNMWRFDMEALPADLVRRGMAVEDPSMPCGVRLVIEDYPYASDG LLIWSAIKEYVESYVDHFYSEPNSVTSDIELQAWWNEIKNKGHFDKRSEPWWPKLDTKEDVSGILTTMIWIASGQHAAINFGQYPFGGYVPSRPTLMRKL IPLENEHDHEKFIRNPQHTFLSSLPTQLQATKIMAAQDTLSTHSPDEEYLGQVSHLHSHWINDHEIVELFNRFSARLEEIEGIINLRNKDARLKNRSGAG VPPYELLVPTSGPGVTGRGIPNSISI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67560		ATLOX6, LOX6	Arabidopsis thaliana lipoxygen...		Potri.008G178000 [exp]	0	1
AT5G10370			helicase domain-containing pro...		Potri.005G071500 [exp]	6.78	0.7049
AT3G07650	CO	COL9	CONSTANS-like 9 (.1.2.3.4)		Potri.002G214500 [exp]	8.36	0.6910
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Potri.010G102300 [exp]	8.94	0.6802	Pt-EXGT.3
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Potri.013G028300 [exp]	14.49	0.7042	Pt-HPT2.2
AT5G05570			transducin family protein / WD...		Potri.010G187700 [exp]	17.00	0.6681
AT3G09760			RING/U-box superfamily protein...		Potri.006G129000 [exp]	24.33	0.6693
					Potri.001G149001 [exp]	27.12	0.6269
AT3G14470			NB-ARC domain-containing disea...		Potri.004G197900 [exp]	36.27	0.6846
AT4G03130			BRCT domain-containing DNA rep...		Potri.014G135520 [exp]	41.78	0.5971
AT5G17640			Protein of unknown function (D...		Potri.013G071000 [exp]	43.48	0.6458

Compare expression of checked genes

Potri.008G178000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.