Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67580 858 / 0 CDKG;2 Protein kinase superfamily protein (.1.2) AT5G63370 470 / 2e-159 CDKG;1 Protein kinase superfamily protein (.1.2.3.4) AT5G64960 283 / 8e-87 CDKC2, CDKC;2 Cyclin-dependent kinase C;2, cyclin dependent kinase group C2 (.1.2) AT5G10270 282 / 1e-86 CDKC;1 cyclin-dependent kinase C;1 (.1) AT3G48750 274 / 4e-86 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G20930 274 / 8e-86 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT1G76540 262 / 2e-81 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT1G18040 259 / 3e-79 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G73690 254 / 2e-77 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT1G66750 249 / 3e-76 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G056900 [exp] 1117 / 0 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G094600 [exp] 586 / 0 AT1G67580 574 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G092100 [exp] 580 / 0 AT1G67580 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G133500 [exp] 281 / 8e-89 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.006G024600 [exp] 284 / 3e-87 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.012G003700 [exp] 272 / 2e-82 AT5G10270 661 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.002G003400 [exp] 261 / 4e-81 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.005G257500 [exp] 256 / 2e-79 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.001G088000 [exp] 257 / 2e-77 AT5G63610 681 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036995 [exp] 926 / 0 AT1G67580 897 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015816 [exp] 918 / 0 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036106 [exp] 288 / 1e-88 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10026790 [exp] 284 / 3e-87 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10022043 [exp] 285 / 6e-83 AT5G10270 710 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10040593 [exp] 253 / 5e-78 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10021611 [exp] 249 / 2e-76 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10038755 [exp] 248 / 2e-76 AT3G48750 468 / 7e-169 cell division control 2 (.1) Lus10035892 [exp] 252 / 2e-74 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10025773 [exp] 251 / 5e-73 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.008G178200.8 pacid=42807765 polypeptide=Potri.008G178200.8.p locus=Potri.008G178200 ID=Potri.008G178200.8.v4.1 annot-version=v4.1 ATGGCCGCTGGGAGATATAGGGGTTGCCACGATAATGAATCCAGGGATCACGAGTCCGATTCTGAATTGTCAAGGGAAGATTTTCCTTATTCCAAGGATA AATTTGATAGAATTGAGAATGGCAATGGTGAAAACGACAGGGGTCGAGTTCGGGAATTAAGGGATAGAGCCAGGGTTAGGCAGAAGGATATTAGGGAGAG AGAAGTGACTAATGGTGGGTATAGTTCGTCTTCTGGTAGAAGTGATTCAGGAAGCAGTGGTAGTGGTGGTGCCCATGGTCCACGGAAGTGTGGGCTTTCA GCTAGGGCCACGGATAGGGAGCCAGGTGAGTTGTCTAGTGAGAGTGGGTCCGATGACGCAATTGACTCCGAGTCACATGCTCACAAAGATAGTGAAGTTT TAAAAGTAGTGGAGAATGGGACTCGGACACCTGTGGAGAAGAAGAGGAAGTTTTCTCCTATAGTCTGGGATAGAGATGACAAACCAGTGAGTAACTCATC AAAAAGTGGGAGCCCCCCTGCAGTGACTGCTCTCCCTCCACCGCCGCCCCTGCCTAAGGCGTACCGCCAGTCACCTAGTTTTATTCCAGAAGGAGGTGTA GGGATATCTCCTGTTAAAAGTAGTAAAAACCAGAATTTGCTGTCTTCTTCACCGCTGAAGGGATCAGTTGGCAATTCTGCATCCGAGTCTCCTGTAGAGT TGGCTTCATCGCCAATGGAGGAGCAGTGGGGCAATGACCAGGAAGCAGAGCACATAGAAGACGAGGATTATGTTCCAATGAGGAATATCTCATCTTCACG ATGGGCAGCTGGCAACAATTCTCCTGTTGATGAAGGTGAAATTGTGGAAGATCAGGAAATTCCTAAAAGGAGGAAGAAGATGCCCCATTCAGAGTTTTTG GATTCCAGAGCACGCAACAAGTTATCAACTCCAGATCCCGGGGATTTTAAGAGAGAAGGTTCTGATGTGGCTAGAGGGAGGTCGTCAGAATCTGATGAGC GAGGCACCTGTGCTAGGCCTTTGAGCGGGGATGATTATCATGGGAATGATTCTGGGAGGGATGACTACATGGATATTGATGAGGAACACAATAACAGTGA TTCTGATATAGATCCTAAGGATGAAGATGATTCTTGCGAAACACCAGAACCTGCAGGTCCACCTCAAAGAAGTGTAAACATGCTTCAGGGGTGTAGAAGT GTTGATGAGTTTGAGAGACTAAATAAAATAGATGAGGGCACTTATGGTGTTGTATATAGAGCCAGAGACAAGAAGACTGGGGAAATTGTAGCATTGAAGA AGGTAAAGATGGAGAAAGAACGTGAAGGTTTTCCACTGACTTCTCTTAGGGAAATAAACATTCTTCTTTCTTTTCATCATCCTTCAGTTGTTGATGTTAA AGAAGTTGTGGTAGGGAGTAGCCTTGATAGCATTTTTATGGTGATGGAGTACATGGAGCATGACCTCAAAGGACTCATGGAGTCAATGAGACAGCCATTT AGTCAGAGTGAAGTTAAATGCTTAATGCTCCAGTTGTTGGAGGGTGTGAAGTATCTTCATGATAATTGGGTTCTTCATCGAGATCTGAAAACGTCAAATC TGCTCTTGAATAATCGTGGCGAGTTGAAGATCTGTGACTTTGGGCTGGCTCGTCAATATGGAAGCCCGTTGAAAACATACACCCATTTGGTGGTTACTCT GTGGTACAGGGCACCAGAATTACTTTTGGGAGGCAAGCAATATTCAACGACAATTGACATGTGGTCCCTGGGCTGCATTATGGCTGAACTGTTATCGAAG GGACCTCTGTTTAATGGAAAGACAGAAGTAGATCAACTTGACAAGATTTTCCGAATCCTTGGTACACCAAATGAGACAATCTGGCCTGGGTTTTCCAAGC TACCTGGAGTGAAGGTCAACTTTGTCAAGCATCAGTATAACCTGCTGCGTAAGAAATTTCCAGCAACGTCCTTCACTGGATCACCGGTGCTTTCTGATTC TGGGTTTGATTTGTTGAACAAACTTCTTACCTATGACCCTGAGAAGAGAATTACTGCTGAAGCTGCTCTTAAACATGACTGGTTTCGTGAAGTTCCTCTT CCAAAGTCTAAAGATTTCATGCCTACTTTTCCTGCTCAGCATGCTCAAGACAGGCGTCTCCGAAGAATAAGGAAGAGTCCAGATCCTTTAGAAGAGCAGC GGAGAAAGGAGTTGCAACAAGGGGAGTTAGGGACCGGTGGTTTGTTTGGCTGA
AA sequence Show only first row Show all	>Potri.008G178200.8 pacid=42807765 polypeptide=Potri.008G178200.8.p locus=Potri.008G178200 ID=Potri.008G178200.8.v4.1 annot-version=v4.1 MAAGRYRGCHDNESRDHESDSELSREDFPYSKDKFDRIENGNGENDRGRVRELRDRARVRQKDIREREVTNGGYSSSSGRSDSGSSGSGGAHGPRKCGLS ARATDREPGELSSESGSDDAIDSESHAHKDSEVLKVVENGTRTPVEKKRKFSPIVWDRDDKPVSNSSKSGSPPAVTALPPPPPLPKAYRQSPSFIPEGGV GISPVKSSKNQNLLSSSPLKGSVGNSASESPVELASSPMEEQWGNDQEAEHIEDEDYVPMRNISSSRWAAGNNSPVDEGEIVEDQEIPKRRKKMPHSEFL DSRARNKLSTPDPGDFKREGSDVARGRSSESDERGTCARPLSGDDYHGNDSGRDDYMDIDEEHNNSDSDIDPKDEDDSCETPEPAGPPQRSVNMLQGCRS VDEFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKEREGFPLTSLREINILLSFHHPSVVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMESMRQPF SQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKTYTHLVVTLWYRAPELLLGGKQYSTTIDMWSLGCIMAELLSK GPLFNGKTEVDQLDKIFRILGTPNETIWPGFSKLPGVKVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALKHDWFREVPL PKSKDFMPTFPAQHAQDRRLRRIRKSPDPLEEQRRKELQQGELGTGGLFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.008G178200 [exp]	0	1
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.010G056900 [exp]	1.00	0.9120
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.012G077700 [exp]	2.82	0.9079
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.009G094400 [exp]	3.46	0.9041
AT1G08620		PKDM7D	Transcription factor jumonji (...		Potri.019G018700 [exp]	4.47	0.9018
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Potri.005G021700 [exp]	6.32	0.8880
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.008G041900 [exp]	6.70	0.9056
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Potri.004G196400 [exp]	6.92	0.8960
AT5G46190			RNA-binding KH domain-containi...		Potri.011G082500 [exp]	7.34	0.8899
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Potri.001G060000 [exp]	8.36	0.8619
AT3G56680			Single-stranded nucleic acid b...		Potri.010G237500 [exp]	8.48	0.8835

Compare expression of checked genes

Potri.008G178200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.