Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67590 306 / 2e-102 Remorin family protein (.1.2) AT1G30320 134 / 6e-35 Remorin family protein (.1) AT2G02170 130 / 1e-33 Remorin family protein (.1.2) AT1G53860 75 / 2e-14 Remorin family protein (.1) AT2G41870 71 / 1e-13 Remorin family protein (.1) AT3G57540 70 / 3e-13 Remorin family protein (.1) AT5G23750 59 / 5e-10 Remorin family protein (.1.2) AT3G61260 58 / 1e-09 Remorin family protein (.1) AT3G48940 57 / 1e-09 Remorin family protein (.1) AT2G45820 54 / 3e-08 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G056800 [exp] 585 / 0 AT1G67590 253 / 8e-82 Remorin family protein (.1.2) Potri.001G358600 [exp] 125 / 7e-32 AT1G30320 448 / 2e-153 Remorin family protein (.1) Potri.008G144300 [exp] 120 / 5e-30 AT2G02170 431 / 5e-147 Remorin family protein (.1.2) Potri.010G098000 [exp] 112 / 3e-27 AT2G02170 434 / 2e-148 Remorin family protein (.1.2) Potri.014G027900 [exp] 82 / 5e-17 AT1G45207 442 / 1e-149 Remorin family protein (.2) Potri.002G125200 [exp] 79 / 7e-16 AT1G45207 384 / 9e-127 Remorin family protein (.2) Potri.001G163000 [exp] 75 / 1e-14 AT1G53860 333 / 6e-110 Remorin family protein (.1) Potri.016G054400 [exp] 72 / 3e-14 AT2G41870 206 / 7e-66 Remorin family protein (.1) Potri.006G053200 [exp] 71 / 1e-13 AT3G57540 196 / 2e-61 Remorin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015817 [exp] 278 / 5e-91 AT1G67590 280 / 5e-92 Remorin family protein (.1.2) Lus10036996 [exp] 127 / 4e-35 AT1G67590 184 / 2e-57 Remorin family protein (.1.2) Lus10023284 [exp] 121 / 3e-30 AT1G30320 422 / 9e-144 Remorin family protein (.1) Lus10038522 [exp] 112 / 7e-29 AT1G30320 296 / 2e-98 Remorin family protein (.1) Lus10026481 [exp] 96 / 1e-23 AT1G67590 63 / 2e-12 Remorin family protein (.1.2) Lus10041239 [exp] 97 / 2e-23 AT1G67590 72 / 6e-15 Remorin family protein (.1.2) Lus10036997 [exp] 92 / 1e-22 AT1G67590 51 / 1e-08 Remorin family protein (.1.2) Lus10026302 [exp] 73 / 9e-15 AT3G57540 209 / 1e-67 Remorin family protein (.1) Lus10042649 [exp] 75 / 2e-14 AT1G45207 424 / 2e-141 Remorin family protein (.2) Lus10005708 [exp] 75 / 2e-14 AT1G45207 454 / 2e-154 Remorin family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [poplar] [flax] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Potri.008G178300.1 pacid=42807380 polypeptide=Potri.008G178300.1.p locus=Potri.008G178300 ID=Potri.008G178300.1.v4.1 annot-version=v4.1 ATGAGATCTGTAGAGGATAAAGGGTGTTACAATCATGGACCAACTCAGGAGATTTCAAGTGGCAATGCAATTAGTTTTGAGTTTCATAAAGGCAATGGAG CTAGTCGCAGTGGTCATCACCGAACAGCTTTAGGCAAACCAACACCATCCAAATGGGATGATGCGCAAAAATGGCTAGTGGGATTGTCAAGAGGAGGGGG AGGTGATAAAAAAGAAAGCAAGCCAAGAAACTCAAATGCCGACGATAGGAGACTGATAGCTCCAGTTCCTCAGATGGAACAGGAGTATTCAAGTGGAGAA GATGAAGTTGAAGGAAAAGCAGAAAATGGGTGTTCCATTTCAATCATAAATCAATATGAAGTGGAGACAAAGAACGTAGATTGCGATGAGTCCGTGTGGA GAATAAACAAGCCTGCGCAGAACTCAACAATGAATGCTGTTAGATCAGTCTGTGTTAGGGACATGGGGACTGAGATGACCCCCATTGCAAGCCAAGAGCC GTCAAGAACAGCAACACCAATTAGAGCCACAACACCCGCGGCGAGGAGCCCCATATCTTCAGGATCTTCCACCCCAGTAAGGGGCCAGCATGGGTTGCAG GGCAATGAAGGCTATCAAACTGGTTTAGCAGTGACTGAAAGCAGAGGTGAGACTCCCGGGGTTGTTAGTGCAACAAGGCACTATGGACAAGAATTTAATG GTTCCAGGATACCTGAGAATACGGATTCAGATCAGGCAAGGAAGATGAATGCTCTAGAAGCCAGAGCGATGGCCTGGGATGAAGCAGAGCGAGCCAAATA CATGGCAAGGTATAAGCGTGAAGAGGTGAAGATCCAAGCCTGGGAAAATCACGAGAAGAGGAAAGCAGAAATGGAAATGAGGAAAATGGAGGTGAAGGCT GAGAGGCTGAAAGCCAGAGCACAAGAACGGCTGGCAAACAAACTGGCCTCGACTAAGAGAATAGCTGAAGAGAAACGAGCAAATGCAGAGGCCAAACTGA ATGAGAAAGCTGTCAAGACTTCTGAGAAGGCAGATCACATGAGGACGACTGGGCACTTGCCCTCTTCATTCTCCTTCAAGTTACCTTCCCTGTGCTGGTA G
AA sequence Show only first row Show all	>Potri.008G178300.1 pacid=42807380 polypeptide=Potri.008G178300.1.p locus=Potri.008G178300 ID=Potri.008G178300.1.v4.1 annot-version=v4.1 MRSVEDKGCYNHGPTQEISSGNAISFEFHKGNGASRSGHHRTALGKPTPSKWDDAQKWLVGLSRGGGGDKKESKPRNSNADDRRLIAPVPQMEQEYSSGE DEVEGKAENGCSISIINQYEVETKNVDCDESVWRINKPAQNSTMNAVRSVCVRDMGTEMTPIASQEPSRTATPIRATTPAARSPISSGSSTPVRGQHGLQ GNEGYQTGLAVTESRGETPGVVSATRHYGQEFNGSRIPENTDSDQARKMNALEARAMAWDEAERAKYMARYKREEVKIQAWENHEKRKAEMEMRKMEVKA ERLKARAQERLANKLASTKRIAEEKRANAEAKLNEKAVKTSEKADHMRTTGHLPSSFSFKLPSLCW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67590			Remorin family protein (.1.2)		Potri.008G178300 [exp]	0	1
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Potri.001G170800 [exp]	4.24	0.7974
AT2G36650			unknown protein		Potri.005G098400 [exp]	7.48	0.7462
AT2G44260			Plant protein of unknown funct...		Potri.001G232500 [exp]	8.36	0.7919
AT5G43020			Leucine-rich repeat protein ki...		Potri.014G024400 [exp]	10.81	0.7861
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.001G239650 [exp]	11.83	0.7226
AT2G27930			PLATZ transcription factor fam...		Potri.001G212400 [exp]	12.72	0.6979
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.005G100900 [exp]	13.96	0.7694
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Potri.011G052400 [exp]	21.00	0.7504
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Potri.001G111700 [exp]	21.84	0.7408
AT1G68470			Exostosin family protein (.1)		Potri.001G382200 [exp]	24.00	0.7519

Compare expression of checked genes

Potri.008G178300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.