Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24340 967 / 0 EMB260, EMB2421 EMBRYO DEFECTIVE 260, EMBRYO DEFECTIVE 2421, FAD/NAD(P)-binding oxidoreductase family protein (.1) AT3G24200 46 / 9e-05 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G051200 [exp] 43 / 0.001 AT3G24200 663 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011372 [exp] 919 / 0 AT1G24340 909 / 0.0 EMBRYO DEFECTIVE 260, EMBRYO DEFECTIVE 2421, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10000752 [exp] 44 / 0.0006 AT1G04780 863 / 0.0 Ankyrin repeat family protein (.1) Lus10006431 [exp] 0 / 1 AT1G24340 100 / 6e-28 EMBRYO DEFECTIVE 260, EMBRYO DEFECTIVE 2421, FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01494 [poplar] [flax] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G178400.1 pacid=42807722 polypeptide=Potri.008G178400.1.p locus=Potri.008G178400 ID=Potri.008G178400.1.v4.1 annot-version=v4.1 ATGGGGTTTTTAGGGTTCATCAAAGGGTTCAGTAGCGTGTACAGAGCTAAACCAAGAATCAGAGTACACCCATCATTTTGCCAATATGGTTACTGTCACA TTCAATGCAGAACCTTTTCACACTTTAAAGATCACGACGATTCAGTGCTTCCAGTTTTGATAGTCGGTGCAGGACCAGTCGGTCTCGTTCTCTCCATTCT TCTTACAAAACTAGGGGTAAAATGCTCTGTTTTGGAGAAGAGCAAGTCCTTTTCACACCATCCTCAGGCACACTTCATCAACAATCGGTCTATGGAGGTG TTTCGCAAGCTGGATGGCCTTGCGGAGGAGATTCAAAGGTCACAACCACCTGTAGATTTATGGAGGAAGTTCGTATATTGTACTTCTCTCACTGGTCCAG TTCTTGGGTCAGTGGATCATATGCAACCTCAAGATTTTGAAAAAGTTGTCAGCCCAGTGTCTGTCGCACACTTCTCTCAGTACAAATTAATTAGATTACT GTTAAAGAAGCTAGAAGATCTCAACTTCCATATTTGTAAACCTGAAGGGCTTAATGATGAGCCCTTCAGGGGTGGGGAGTTATTAATGGGGCACGAGTGT GTAAAGATCAATGCCACTGGTCAATCTGTAAATGTAACTGCTTCTCATCTCAAGGAAGGGAAGTACACAGAGAGAAATATTAGCTGCAATATCCTTGTTG GAACAGATGGTGCAGGAAGTACTACACGGAAGCTTGCAGGAATAGAACTGAGAGGTGAAAAAGACCTGCAAAAGCTTGTCAGTGTTCATTTTTTAAGCAG AGACCTTGGACAATACTTACTCAATGAGAGACCTGGAATGTTGTTCTTTATCTTCAATACCGAAGCTATTGGAGTCCTTGTTGCTCATGATCTCATGCAA GGAGAATTCGTATTGCAGATGCCATTCTATCCACCCCAGCAGAGCCTTGATGATTTCAGCCCCGAGACATGCAAACACCTCATCTTGAAATTGGTTGGTC AAGAGCTTTCAGACATTGATGTGATTGATATAAAGCCATGGGTGATGCATGCTGAAGTTGCAGAAAAGTTTGTGAGCTGCGACAATCGAATAATACTTGC TGGGGATGCTGCTCATCGATTCCCCCCAGCTGGTGGTTTTGGAATGAATACTGGCATTCAGGATGCTCATAATCTCGCCTGGAAAATAGCTGCTCTTGTA AAGGGTATTGCACCGTCTTCAATACTTCATACTTATGAAACAGAACGTAGGCCGATTGCAATTTTTAACACAGCACTGAGCGTCCAAAACTTCAGAGCAG CCATGGCAGTTCCTGCTACACTTGGTCTTGACCCAACCGTTGCAAATTCAGTGCATCAAACCATTACTGATGGAGTTGGTTCCATTTTGCCATCTGGATT ACAGAGGGCAATTTTGGATGGAATTTTCACAATAGGTCGTGCACAGCTTTCAGAATTTCTTCTAAATGAGAAAAACCTACTGGGGTCTTCAAGGCTTGCT AAACTAAGGCGTTTATTTGAAGAGGGAAAGAGCCTTCAGCTGCAGTTTCCTGCCGAGGATCTTGGCTTCAGGTACCTTGAAGGAGCACTCATTCCTGACA GTGACAGTGTGGGTACTCAAGAACCACCAACTGGTCGTCGGAGGGACTATATCCCTTCTTCAGATCCAGGGTCAAGGCTGCCTCATATGAATGTGCGCAT GTTGTCCAATTCTTCTAGTGAGGCATGCATTTCTACACTTGATCTTTTGCCTTTGGACAAAGTTGAGTTTCTACTCTTCATAGCACCACTTGAAAAGTCC TACCACCTTGCTGTTGCTGCCCTGAAGGTGGCTGAGGAATTCAAAGTTTCTGTTAAGGTTTGCATACTGTGGCCTACCGAAACTGTTAAAGGAGCTGAAG CGAGGAGTAAGACAGCAATGGCGCCATGGGAGAACTATATAGATGTTGCAGAAGCTAAGAAATCGTCAAATTCATCTTCATGGTGGAGCATGTGTCAAAT GACTGAGAAAGGAGCAATTTTAGTTAGGCCCGATGAACATATTGCTTGGCGTGCAAAGTCAGGTCTTGATGATGATCCAATTTTACAAATGAAAAGTGTT TTTTCTGCAATATTGAAGGTATAA
AA sequence Show only first row Show all	>Potri.008G178400.1 pacid=42807722 polypeptide=Potri.008G178400.1.p locus=Potri.008G178400 ID=Potri.008G178400.1.v4.1 annot-version=v4.1 MGFLGFIKGFSSVYRAKPRIRVHPSFCQYGYCHIQCRTFSHFKDHDDSVLPVLIVGAGPVGLVLSILLTKLGVKCSVLEKSKSFSHHPQAHFINNRSMEV FRKLDGLAEEIQRSQPPVDLWRKFVYCTSLTGPVLGSVDHMQPQDFEKVVSPVSVAHFSQYKLIRLLLKKLEDLNFHICKPEGLNDEPFRGGELLMGHEC VKINATGQSVNVTASHLKEGKYTERNISCNILVGTDGAGSTTRKLAGIELRGEKDLQKLVSVHFLSRDLGQYLLNERPGMLFFIFNTEAIGVLVAHDLMQ GEFVLQMPFYPPQQSLDDFSPETCKHLILKLVGQELSDIDVIDIKPWVMHAEVAEKFVSCDNRIILAGDAAHRFPPAGGFGMNTGIQDAHNLAWKIAALV KGIAPSSILHTYETERRPIAIFNTALSVQNFRAAMAVPATLGLDPTVANSVHQTITDGVGSILPSGLQRAILDGIFTIGRAQLSEFLLNEKNLLGSSRLA KLRRLFEEGKSLQLQFPAEDLGFRYLEGALIPDSDSVGTQEPPTGRRRDYIPSSDPGSRLPHMNVRMLSNSSSEACISTLDLLPLDKVEFLLFIAPLEKS YHLAVAALKVAEEFKVSVKVCILWPTETVKGAEARSKTAMAPWENYIDVAEAKKSSNSSSWWSMCQMTEKGAILVRPDEHIAWRAKSGLDDDPILQMKSV FSAILKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24340		EMB260, EMB2421	EMBRYO DEFECTIVE 260, EMBRYO D...		Potri.008G178400 [exp]	0	1
AT1G31430			Pentatricopeptide repeat (PPR-...		Potri.003G088600 [exp]	5.29	0.8503
AT4G39952			Pentatricopeptide repeat (PPR)...		Potri.005G074000 [exp]	11.48	0.8218
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Potri.015G003000 [exp]	14.17	0.8238
AT5G14080			Tetratricopeptide repeat (TPR)...		Potri.001G326800 [exp]	15.49	0.8371
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.001G273100 [exp]	16.27	0.8165
AT1G26500			Pentatricopeptide repeat (PPR)...		Potri.016G086100 [exp]	18.11	0.8126
AT1G22660			Polynucleotide adenylyltransfe...		Potri.013G111300 [exp]	18.97	0.7432
AT5G13230			Tetratricopeptide repeat (TPR)...		Potri.003G164900 [exp]	19.41	0.8013
AT3G23330			Tetratricopeptide repeat (TPR)...		Potri.001G186500 [exp]	19.44	0.8152
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Potri.016G095900 [exp]	20.00	0.7561

Compare expression of checked genes

Potri.008G178400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.