Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27850 567 / 0 unknown protein AT2G40070 66 / 1e-10 unknown protein AT3G08670 52 / 3e-06 unknown protein AT3G09000 51 / 4e-06 proline-rich family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G056200 [exp] 1676 / 0 AT1G27850 240 / 1e-64 unknown protein Potri.008G066900 [exp] 78 / 2e-14 AT2G40070 321 / 1e-102 unknown protein Potri.010G190300 [exp] 77 / 3e-14 AT2G40070 368 / 6e-121 unknown protein Potri.010G177000 [exp] 57 / 4e-08 AT2G40070 82 / 9e-17 unknown protein Potri.016G139500 [exp] 52 / 2e-06 AT3G08670 245 / 2e-73 unknown protein Potri.016G114900 [exp] 46 / 0.0001 AT2G40070 352 / 7e-114 unknown protein Potri.006G110700 [exp] 45 / 0.0003 AT3G08670 251 / 1e-75 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011374 [exp] 867 / 0 AT2G40070 151 / 8e-37 unknown protein Lus10006433 [exp] 855 / 0 AT1G27850 501 / 1e-158 unknown protein Lus10030402 [exp] 67 / 5e-11 AT2G40070 561 / 0.0 unknown protein Lus10040188 [exp] 64 / 4e-10 AT2G40070 533 / 0.0 unknown protein Lus10024526 [exp] 56 / 2e-07 AT2G40070 66 / 2e-11 unknown protein Lus10025209 [exp] 56 / 2e-07 AT3G08670 398 / 6e-131 unknown protein Lus10021382 [exp] 55 / 3e-07 AT3G08670 432 / 4e-145 unknown protein Lus10004390 [exp] 52 / 9e-07 AT2G40070 321 / 5e-107 unknown protein Lus10037838 [exp] 53 / 1e-06 AT2G40070 551 / 0.0 unknown protein Lus10004824 [exp] 49 / 2e-05 AT3G09000 286 / 3e-90 proline-rich family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G178600.1 pacid=42807826 polypeptide=Potri.008G178600.1.p locus=Potri.008G178600 ID=Potri.008G178600.1.v4.1 annot-version=v4.1 ATGCCGCCTTCTCCGGCATTGAGGTACTCTCCTGGGAGAGAGCCAAGAGCTGACAATCATAAGCGAGGGCGTAGCCTTGAAGGTGGATTGCTCCTCAAAG ATAAAGATGACGATCTTGCTATGTTCAATGAAATGCAGTCTAGAGAAAGAGAGAGTTTCTTGCTTCAGTCAGCTGATGACTTTGAAGTCACGTTCTCTTC AAAGTTGAGATACTTCTCAGACTTCAAACTTGGAGTTTCAATCCCTGTTCGAGGAGAGAATAGTGAACTTCTTAATATAGATGGGGAGAAGGATGACTAT GACTGGTTATTAACTCCGCCTGACACCCCACTTTTTCCTTCTTTGGATGATGAGCCGCCACCAGTTAATGTTGCATCCAGGGGCAGACCACGTAGTCAAC CCATTTCCATAGCAAGATCTTCGACAATGGAGAAGAGTCACAGGAGCAGTAGGGGCAGTGCAAGTCCAAATCGCTTAAGCCCTTCCCTGGGTTCTGGTAA CAGCACATTTCAGTCAAGAGGAAGGCCGTCATCAGCACCTCATTCTAGTCCAACTCCCACTCAACAGCCTGCCACTCCATCACGTAGGCCATCTCCTCCT CCAAGTAAAGCCTCAACATCTGCTCCTAGGTCTTCAACTCCAGGGAGAATGAGCACAGGATCAGGGGCGAGGGGAACTTCGCCCATAAGGACAAGTAGAG GGAACTCTGCCTCACCAAAAATAAGGGCATGGCAGTCAAATATCCTTGGTTTCTCCTCTGAAGCACCACCAAATCTTCGCACTTCTCTAGCTGATCGGCC AGCATCATATGTAAGGGGTTCCTCTCCAGCATCCAAAAATAGTAGGGACTCAGGCTCAAAATTTGGCAGGCAATCAATGTCTCCAGCCTCTAGAAGTGTT AGTTCATCACACAGTCATGATAGAGACCCAATTAGCTCACACAGCAAAGGTTCTGTGGCATCATCTGGTGATGATGATGTGGACTCTCTACAATCCATTC ATGTGGGTAGCTTAGACCGCTTGGCTTCGAAGAGAATTGGTGGCTTTCCTAATAATAGAGCTCCTGCATTCTCCAAGAACTCAACTAGAATATTTTCCCC AAGTTCTGCTCCAAAAAGATCCTTCGACTCTGCTATTCGTCAAATGGATCATCGGAAAAGTCCTCAGAACATGTTCAGACCACTTTTATCTAGTGTCCCC AGCACTACCTTATACGGTGGAAAAGCAAGTTCTGCACATCGTTCATTGATGTTGAGGAACTCTTCTGTTACAACCAGCAGTAATGCGAGTTCTGATCAAG GTACCAGTGCTGCACCAGATACCAAGGGAAGTTGCCGCCACCAGGAAGATATGGCAGCTGAAAGTGGCAAGGTACCATACCCTGATGCTCTGGAAGAGGT TTTTGCCTTTGATAAGGCAGATGCATTCAATAAGGATGTCAGGCATGATGCAGATGATAGTCTTCATTCTCGGCTGCGTGACTTTGACAGAGGCACCACA ATTGAACATGAGCCTGGTGACTGTGAGGAGCTCAGACACCATGACATTGAAATCAGTTCTGCTTCTGACACTATATGCATCAAGGCTGATTTTTCAGAAG TTGATAGTCTAGAAAACACAGAAGTTTGTTCTAAATGTGGTTGCAGGTTTCATGTTATTGAAACCCTGGAAAAGGATGTAAATCTATGTCCTGAGTGCTG TAGGCAAGACAATCTTGTGGGTGCTGCCATTCCAGACACACTAATAGTAGCTGATGAGAGCCTCCCAGTGCCGTCTATCAAGATATCTAAAGAATACAAG CAATCTGATGAGCCAGATATCCAGGTGGATGTGCCTGAATTACAGCCACAAGTTAATGATTTGGACTCACAATTTGTTGATATGGTTGATGCAAGGGTTT CCAGGCATGAAGACAGAGTTAAGCAAAGTGAGACTTCACACCACGAGCAAAAGCGATTTTATTCCCGAGAAAGTTCTCTTACTAGGTCTTTGATGGAGGG AAGTGAACATAGTACCACAGGCCATCATGAAACAGGACAGCCACCTGCTGGTTATAGCCTTCCTGGTGGAGATGCTGGAGATCATCAATTGCCGCACTCA AATAACTATCCAAGTTTGAAGGCTGGTGTTTCAGAAGGTGCTGGCATTTCTGTATTACTCAAGAAGTCTAGCAGCAGCAAGGGGCCTGTTGTTCAAGGCA GGACTTTAGTTGCTTCTACGATTACTTATGATGATTTGTCTTATGCAAGAGACAGTGCAAACAGTTTGAGAAGCTCCATTGGGTATGGCAGTACATCTGC ATCATCCTCCATTGATTTCAGCTCTGGCAGACACGCGGAAACACGTGTTCAACGACAGTTAAGTGGCAGGAAATCTGACCTGGAGAACTACAGATATGAC CTAAACTCAAGACCTCAAAGCACTTCATCATCTTTTTCTGGAACTTTAAGTGATGGTCACCAAACTCTAGGTCTTGCAACAAACAGACACGAAGAAAATG TTGAGGTTACTGTTGGCAATATGAAATATGATAGGTTGGAGGAGACTCCTGTAGCTTCCCAAAGGATATTGCTGGCTTCAGAAAATAAAGAACTGGATGT TTCCCGTATATTTTTTACTGGTGCAAAGGTTCCTGAAGAAGATTTGTTTGAGCAAAATGACAGTAATAGGAAAACTGATATCTCTTCCTCAGATTTGCCA CATCATACGGTTGGCATTCACCTGGAGGAGAATTCAGTAGTATCATATGAAAACAGAGAAGATTTGCCAAACAATGCAGGGGATGTCTCAGATGTAGAAG CATCAGCTATTCCTCTAGAGCCTTCTGTTGAAGCCAAACATAACATGCTGAATACTAGTCTTGACAGATTGGATGTTACTGAGGTTACTACTCATAGGCG TTTGGCTTCAATATCAGAAATAGAAGCTGAGAACAATTGTTATAGTAATGGGTCAGAGAATGATGATATATCGACAAAATCAAGGAGCACCATGAATGAA GTTCAGGATCACCCAGTCCCAGCACCTCCAGATAAGGAAACAACTGCTTCTGTTTTGGAACACAACATGCCAGATCATGCAGATAGCATATTAGAGGAGT CAACCATAATGGTCGACTGTCAAGGAGGGAGCAAGGCAAGAAGCCTATCCCTTGACGAAGTAACCGATGCAGCACTTTTCTGTAGCTCCATTGTTCATGA TCTGGCCTACCATGCTGCAACTATAGCCTTCGAAAAGGAAAGTTCAGAACCATTGGAAGGTTCTCGGCCAACAGTTACAATTCTCGGAGAGTCCACTGCT GACAGAAAGGATCCACGTGGAAGACCTGCTGGAAAACGAACTTCAAAATCCCAAAAAGTCAAGCAGAGGCGGGCAGAAACAGATGTCAAACACTCTGCCA ACAAGACTGAGAACGATGAGAATTCCAATGAATCCATGGTGCGTAATGTTGGGCTTCCCAACGAGATGGACAGTATGAAGCCTCCGAAGCTAGAATCCAA GTGCAATTGCACAATAATGTGA
AA sequence Show only first row Show all	>Potri.008G178600.1 pacid=42807826 polypeptide=Potri.008G178600.1.p locus=Potri.008G178600 ID=Potri.008G178600.1.v4.1 annot-version=v4.1 MPPSPALRYSPGREPRADNHKRGRSLEGGLLLKDKDDDLAMFNEMQSRERESFLLQSADDFEVTFSSKLRYFSDFKLGVSIPVRGENSELLNIDGEKDDY DWLLTPPDTPLFPSLDDEPPPVNVASRGRPRSQPISIARSSTMEKSHRSSRGSASPNRLSPSLGSGNSTFQSRGRPSSAPHSSPTPTQQPATPSRRPSPP PSKASTSAPRSSTPGRMSTGSGARGTSPIRTSRGNSASPKIRAWQSNILGFSSEAPPNLRTSLADRPASYVRGSSPASKNSRDSGSKFGRQSMSPASRSV SSSHSHDRDPISSHSKGSVASSGDDDVDSLQSIHVGSLDRLASKRIGGFPNNRAPAFSKNSTRIFSPSSAPKRSFDSAIRQMDHRKSPQNMFRPLLSSVP STTLYGGKASSAHRSLMLRNSSVTTSSNASSDQGTSAAPDTKGSCRHQEDMAAESGKVPYPDALEEVFAFDKADAFNKDVRHDADDSLHSRLRDFDRGTT IEHEPGDCEELRHHDIEISSASDTICIKADFSEVDSLENTEVCSKCGCRFHVIETLEKDVNLCPECCRQDNLVGAAIPDTLIVADESLPVPSIKISKEYK QSDEPDIQVDVPELQPQVNDLDSQFVDMVDARVSRHEDRVKQSETSHHEQKRFYSRESSLTRSLMEGSEHSTTGHHETGQPPAGYSLPGGDAGDHQLPHS NNYPSLKAGVSEGAGISVLLKKSSSSKGPVVQGRTLVASTITYDDLSYARDSANSLRSSIGYGSTSASSSIDFSSGRHAETRVQRQLSGRKSDLENYRYD LNSRPQSTSSSFSGTLSDGHQTLGLATNRHEENVEVTVGNMKYDRLEETPVASQRILLASENKELDVSRIFFTGAKVPEEDLFEQNDSNRKTDISSSDLP HHTVGIHLEENSVVSYENREDLPNNAGDVSDVEASAIPLEPSVEAKHNMLNTSLDRLDVTEVTTHRRLASISEIEAENNCYSNGSENDDISTKSRSTMNE VQDHPVPAPPDKETTASVLEHNMPDHADSILEESTIMVDCQGGSKARSLSLDEVTDAALFCSSIVHDLAYHAATIAFEKESSEPLEGSRPTVTILGESTA DRKDPRGRPAGKRTSKSQKVKQRRAETDVKHSANKTENDENSNESMVRNVGLPNEMDSMKPPKLESKCNCTIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27850			unknown protein		Potri.008G178600 [exp]	0	1
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Potri.001G443200 [exp]	3.46	0.8628	MOR2,Pt-MOR1.2
AT1G29170		ATSCAR3, WAVE2	WASP \(WISKOTT-ALDRICH SYNDROM...		Potri.011G066100 [exp]	4.24	0.8743
AT1G27210			ARM repeat superfamily protein...		Potri.010G038900 [exp]	4.89	0.8832
AT5G42710			unknown protein		Potri.002G261700 [exp]	6.92	0.8716
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Potri.005G215400 [exp]	8.94	0.8263
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Potri.008G128800 [exp]	12.40	0.8154
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Potri.005G038850 [exp]	12.48	0.7729
AT2G31930			unknown protein		Potri.001G232200 [exp]	14.07	0.8403
AT4G33450	MYB	ATMYB69	myb domain protein 69 (.1)		Potri.007G106100 [exp]	17.54	0.8467
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Potri.010G052600 [exp]	17.66	0.7908

Compare expression of checked genes

Potri.008G178600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.