Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25950 266 / 4e-90 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT5G14280 270 / 1e-87 GeBP DNA-binding storekeeper protein-related (.1) AT3G27270 224 / 2e-73 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G335100 [exp] 267 / 1e-90 AT5G14280 333 / 6e-112 DNA-binding storekeeper protein-related (.1) Potri.010G056000 [exp] 94 / 2e-24 AT5G14280 72 / 6e-16 DNA-binding storekeeper protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036981 [exp] 240 / 9e-80 AT5G14280 243 / 9e-81 DNA-binding storekeeper protein-related (.1) Lus10014607 [exp] 215 / 1e-69 AT5G14280 311 / 3e-103 DNA-binding storekeeper protein-related (.1) Lus10015821 [exp] 194 / 8e-59 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032075 [exp] 135 / 2e-39 AT5G14280 197 / 3e-60 DNA-binding storekeeper protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G178800.1 pacid=42807219 polypeptide=Potri.008G178800.1.p locus=Potri.008G178800 ID=Potri.008G178800.1.v4.1 annot-version=v4.1 ATGGATGCTCTAGTTCTCGTGTTTCCAACCCTACCCAGATTCTTTGCTGGGTTCATCTCCATGTATTTTTTAGGTTATTTTGTGTTTTTTCGAAACTGGG AACTGAAACATCGAAAAGAAGCTTCAAGCTGCCTCATGTCCCTAGCTCATGGCAGTCCTGCGGTTATTATGGCTGTCCGTGCACTACTACACAGCCAGAC CTTAGGTACCTTTGCTAATCCCAACTCTGCTTTAGAAAACACAGTCCTTGATTTCAGTATGGCTTACTTCTTGGCAGACCTTCTTCACTACATGGTATTC TTCCCTGATGAAACTCTCTTCATACTTCACCATTTAGCAACATTATATGTGTTTGTCACTTGTCGTTATATGATCCATTATGGAGCACACGGACTTCTTC TGCTACTCATACTTGCCGAGGTTACAAGTGCTTGCCAGAATGTCTGGAGCATTGCCGGTAGCCGGAAAGCTGATGTTCCTGCCGCTGCAAGATTGCATGA ATTTTTGGCGGTTCCGTTCTATGCCCTCTACTCTCTCGTTAGAGGTATTCTCGGTCCTGTCTGTTTGTTTAAGATGGGGGTGTTTTATCTGAATGGAGGA GCTCACGGTTTGATTCCTGCATGGGCTTGGATTTCTTGGATGGTTGTGATTGGAAGTGCAATATTGGTTAGCATATTGTGGGTTTCAAATCTCTGGGCAG AATGGATTAGAGAGAGAAGCCATCGAGCACAGAAGAAAGTTGGGTAG
AA sequence Show only first row Show all	>Potri.008G178800.1 pacid=42807219 polypeptide=Potri.008G178800.1.p locus=Potri.008G178800 ID=Potri.008G178800.1.v4.1 annot-version=v4.1 MDALVLVFPTLPRFFAGFISMYFLGYFVFFRNWELKHRKEASSCLMSLAHGSPAVIMAVRALLHSQTLGTFANPNSALENTVLDFSMAYFLADLLHYMVF FPDETLFILHHLATLYVFVTCRYMIHYGAHGLLLLLILAEVTSACQNVWSIAGSRKADVPAAARLHEFLAVPFYALYSLVRGILGPVCLFKMGVFYLNGG AHGLIPAWAWISWMVVIGSAILVSILWVSNLWAEWIRERSHRAQKKVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25950			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.008G178800 [exp]	0	1
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052600 [exp]	1.73	0.9605
AT4G27020			unknown protein		Potri.001G424500 [exp]	2.00	0.9360
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Potri.004G207200 [exp]	3.46	0.9425
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Potri.008G095600 [exp]	6.48	0.9369
AT1G14780			MAC/Perforin domain-containing...		Potri.008G136401 [exp]	7.00	0.9329
AT2G16050			Cysteine/Histidine-rich C1 dom...		Potri.004G149500 [exp]	7.93	0.9020
AT5G01540		LECRKA4.1	lectin receptor kinase a4.1 (....		Potri.016G123501 [exp]	8.48	0.9297
AT5G38260			Protein kinase superfamily pro...		Potri.007G125600 [exp]	10.95	0.9285
AT4G03410			Peroxisomal membrane 22 kDa (M...		Potri.019G103200 [exp]	12.72	0.9286
AT5G38260			Protein kinase superfamily pro...		Potri.007G125450 [exp]	12.96	0.9334

Compare expression of checked genes

Potri.008G178800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.