Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01750 579 / 0 Ankyrin repeat family protein (.1) AT3G04140 512 / 2e-174 Ankyrin repeat family protein (.1) AT5G60070 81 / 1e-15 ankyrin repeat family protein (.1) AT2G01680 74 / 2e-13 Ankyrin repeat family protein (.1) AT1G07710 71 / 1e-12 Ankyrin repeat family protein (.1) AT4G10720 69 / 4e-12 Ankyrin repeat family protein (.1.2) AT2G31820 68 / 1e-11 Ankyrin repeat family protein (.1) AT3G12360 68 / 1e-11 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT5G02620 65 / 1e-10 ATANK1, ANK1 ankyrin-like1 (.1) AT5G54610 64 / 1e-10 ANK ankyrin (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G055700 [exp] 1081 / 0 AT3G01750 514 / 1e-175 Ankyrin repeat family protein (.1) Potri.001G335400 [exp] 745 / 0 AT3G01750 701 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 92 / 3e-19 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.018G042200 [exp] 86 / 3e-17 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.008G134500 [exp] 83 / 2e-16 AT2G01680 750 / 0.0 Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 82 / 4e-16 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 80 / 2e-15 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 79 / 4e-15 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 78 / 9e-15 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022330 [exp] 628 / 0 AT3G01750 633 / 0.0 Ankyrin repeat family protein (.1) Lus10041582 [exp] 622 / 0 AT3G01750 635 / 0.0 Ankyrin repeat family protein (.1) Lus10036974 [exp] 470 / 4e-160 AT3G01750 308 / 2e-97 Ankyrin repeat family protein (.1) Lus10038609 [exp] 84 / 2e-17 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10025289 [exp] 85 / 5e-17 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 81 / 9e-16 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 79 / 3e-15 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10024440 [exp] 76 / 3e-14 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10029007 [exp] 75 / 7e-14 AT5G51160 128 / 4e-32 Ankyrin repeat family protein (.1) Lus10034579 [exp] 74 / 1e-13 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF13637 [poplar] [flax] Ank_4 Ankyrin repeats (many copies)
Representative CDS sequence Show only first row Show all	>Potri.008G179100.2 pacid=42807696 polypeptide=Potri.008G179100.2.p locus=Potri.008G179100 ID=Potri.008G179100.2.v4.1 annot-version=v4.1 ATGCCACCTTCGCACTTTCCTCTTAGGTGGGAAAGCACTGGAGATCAGTGGTGGTATGCGACACCCATTGATTTTGCAGCTGCTAATGGCCACTATGACT TGGTGAGGGAACTTCTTTACCTTGACACGAATCTCCTAATCAAACTCACTTCCCTTCGTCGGATTCGTCGGCTAGAAACTGTTTGGGACGACGAGGAGCA GTTCAATGATGTTGCCAAATGTCGTTCTCATGTAGCCAGGCAGCTCCTGCTAGAATGCGAAACAAAAAGAGGTCACAACACTCTCATTAGAGCTGGATAT GGTGGTTGGCTTTTGTACACTGCTGCCTCGGCTGGTGATGGGAGCTTTGTCAAGGAATTGTTGGAGAGAGACCCTCTTCTTGTTTTTGGAGAAGGAGAAT ATGGTGTTACTGACATATTTTATGCCGCGGCCAGGAGCAGGAACTCTGAGGTTTTCAGGCTCTTGCTTGATTTCTCTATTTCACCACGTTGTGGCCTTGG CTCTGGAGGAGAGTTGGTAGAGCAGCAGATTGAGAGTCATTCGGAATTTAACTGGGAGATGATGAATAGAGCTGTCCATGCTGCGGCTAGAGGTGGGAAT TTGGAGATCTTGAAGGAGCTTCTAGGAGATTGCTCTGATATTCTGGCTTATAGAGATGCTCAAGGGTCCACGGTCTTACATGCTGCCGCAGGGAGGGGGC AGGTCGAGGTGGTTAAGGATCTTATTACATCCTTTGATATCATTGCCTCCAAAGATTATCAAGAGAACACAGCACTGCATGTGGCTGCTTACAGGGGTTA CTTAGCTGTGGCAGAGGTTCTGATACTTGCATCTCCCTCACTCGCAACCTTTACAAACAGCTATGGAGATACTTTTCTCCATATGGCAGTGTCAGGTTTT CGAACCTCTGGTTTTCGAAGAGTGGATTGGCAGATTGAGCTCATCAAGCAGTTAGCAAGTGGTAAAATTTTGAATATCAAAGATGTCATCAATGTCAAGA ACAATGATGGAAGAACAGTTCTTCATTTGGCTGTAATCGAGAATATTCAGTCTGATCTGGTGGAACTTCTCATGACTGTACCATCAATCAACTTAAATAT CCGTGATGCAAATGCCATGACTCCACTAGATCTCCTCAAGCAACGACCGAGATCAGCATCTTCTCAAATCTTAATAAAGGAGCTGATTTCAGCCGGGGGG ATCTCTAATTGTCAGGATAACATAGCTAGAAGTGCTATGGTTTCCCATCTGAAAGGGCATGGTATAGGAATGAGTCCTGGCACTTCTTTTAGAATTCCAG ATGCAGAGATATTCTTGTACACTGGTATCGAGAACGCATTTGATGCCAGTTGTGATGACACAAGTGTTGGTGACAATTCATGCTTTAGCGATCCAAGTGA TATTGACATGGGTAACTCACTGGACAACAAAAAATCAGGTTCTGTAAATAATACTGCAAGGCGTCTCAGGTCTCTCCTTCAGTTGCCCAGGAGGAAAGAG AAAAAAGCTGCTTTTATGGAATTAGAAGATGACGACCCTTTGAACTCATTTAATTTATGCCAAACCTTGGAAGACCGTCCAATTCCTCTCCGGCAGAGAT ACTCAAAACTGTTTTCCTTCTCAACCAACAAAAGGACATTTTCTGGAAGGAGCAGTCTTCCAAGTCCATTAACTAGAAAGAAATTTACCATCGGGCTAAT GCATGGTGTTATTCAGGCAAAACAACATTTAGCCGTTTCACCTTCAAGTCCCTTTCCAAGGTCATCCCTGTCTTCGCCCATTTCATTGGATAAAGAAAAG GACATCGATATTGCAGGAACCTCATACTCAAATCAGCCATTAAAACATAAGCAAGCATCCTTCAACAAGAAGTTGATGAACCAGTACTTTTGTTTTGGTG CACAAGGTCTAACAGTGGAAGCTTCAGGGACAAATCAGAGCTACAAGCATGCCAATCCATTAGTAGCCTGA
AA sequence Show only first row Show all	>Potri.008G179100.2 pacid=42807696 polypeptide=Potri.008G179100.2.p locus=Potri.008G179100 ID=Potri.008G179100.2.v4.1 annot-version=v4.1 MPPSHFPLRWESTGDQWWYATPIDFAAANGHYDLVRELLYLDTNLLIKLTSLRRIRRLETVWDDEEQFNDVAKCRSHVARQLLLECETKRGHNTLIRAGY GGWLLYTAASAGDGSFVKELLERDPLLVFGEGEYGVTDIFYAAARSRNSEVFRLLLDFSISPRCGLGSGGELVEQQIESHSEFNWEMMNRAVHAAARGGN LEILKELLGDCSDILAYRDAQGSTVLHAAAGRGQVEVVKDLITSFDIIASKDYQENTALHVAAYRGYLAVAEVLILASPSLATFTNSYGDTFLHMAVSGF RTSGFRRVDWQIELIKQLASGKILNIKDVINVKNNDGRTVLHLAVIENIQSDLVELLMTVPSINLNIRDANAMTPLDLLKQRPRSASSQILIKELISAGG ISNCQDNIARSAMVSHLKGHGIGMSPGTSFRIPDAEIFLYTGIENAFDASCDDTSVGDNSCFSDPSDIDMGNSLDNKKSGSVNNTARRLRSLLQLPRRKE KKAAFMELEDDDPLNSFNLCQTLEDRPIPLRQRYSKLFSFSTNKRTFSGRSSLPSPLTRKKFTIGLMHGVIQAKQHLAVSPSSPFPRSSLSSPISLDKEK DIDIAGTSYSNQPLKHKQASFNKKLMNQYFCFGAQGLTVEASGTNQSYKHANPLVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01750			Ankyrin repeat family protein ...		Potri.008G179100 [exp]	0	1
AT1G73300		SCPL2	serine carboxypeptidase-like 2...		Potri.001G291800 [exp]	4.47	0.8785
AT2G42770			Peroxisomal membrane 22 kDa (M...		Potri.010G032900 [exp]	5.29	0.8934
AT5G42850			Thioredoxin superfamily protei...		Potri.001G225500 [exp]	10.39	0.8538
AT2G22960			alpha/beta-Hydrolases superfam...		Potri.001G291450 [exp]	13.49	0.8523
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Potri.005G215900 [exp]	14.14	0.8466
					Potri.004G212550 [exp]	15.09	0.8675
AT3G21300			RNA methyltransferase family p...		Potri.001G195300 [exp]	15.23	0.8636
AT5G52540			Protein of unknown function (D...		Potri.004G079300 [exp]	16.30	0.8477
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.001G229166 [exp]	20.19	0.8430
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G291700 [exp]	24.33	0.8321

Compare expression of checked genes

Potri.008G179100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.