Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13450 542 / 0 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT3G25990 522 / 0 Trihelix Homeodomain-like superfamily protein (.1) AT2G38250 77 / 1e-15 Trihelix Homeodomain-like superfamily protein (.1) AT5G01380 73 / 4e-14 Trihelix Homeodomain-like superfamily protein (.1) AT1G76890 67 / 5e-12 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G76880 67 / 9e-12 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G63420 55 / 5e-08 Trihelix EMB2746 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) AT1G33240 54 / 1e-07 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT5G28300 51 / 9e-07 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G47660 49 / 3e-06 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G055000 [exp] 701 / 0 AT1G13450 518 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Potri.001G129900 [exp] 71 / 2e-13 AT2G38250 115 / 4e-30 Homeodomain-like superfamily protein (.1) Potri.003G104500 [exp] 65 / 2e-11 AT2G38250 118 / 3e-31 Homeodomain-like superfamily protein (.1) Potri.016G117300 [exp] 64 / 2e-11 AT5G01380 179 / 2e-54 Homeodomain-like superfamily protein (.1) Potri.001G309100 [exp] 65 / 3e-11 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.002G068600 [exp] 64 / 9e-11 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.019G010200 [exp] 62 / 2e-10 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.006G101400 [exp] 61 / 4e-10 AT5G01380 179 / 8e-55 Homeodomain-like superfamily protein (.1) Potri.002G068400 [exp] 61 / 6e-10 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015824 [exp] 649 / 0 AT1G13450 533 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Lus10036978 [exp] 617 / 0 AT1G13450 523 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Lus10004806 [exp] 74 / 3e-14 AT5G01380 239 / 5e-77 Homeodomain-like superfamily protein (.1) Lus10028584 [exp] 68 / 4e-12 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10002481 [exp] 58 / 6e-11 AT2G38250 91 / 4e-24 Homeodomain-like superfamily protein (.1) Lus10018887 [exp] 64 / 8e-11 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10018888 [exp] 62 / 5e-10 AT1G76880 360 / 2e-117 Duplicated homeodomain-like superfamily protein (.1) Lus10029778 [exp] 60 / 2e-09 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10042806 [exp] 56 / 3e-08 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10033504 [exp] 56 / 3e-08 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G179700.2 pacid=42808296 polypeptide=Potri.008G179700.2.p locus=Potri.008G179700 ID=Potri.008G179700.2.v4.1 annot-version=v4.1 ATGTACTTGTCAGAGAAGCCTCGCCCTCTCGATTTCTACAAAGAAGAAGTAGGACCATCGTCTTCTAGAGACAACATGATTATCGAAGTTGTCTCTTCCA ACGGCGATTTGCCACCTCTTCATCTTCACCCCATCACCGCTGCTACCAACCCACACCAGATGATTCTCGGCGAAAGCAGCGGCGATGACAACCACGAAGT CAAAGCACCCAAGAAGCGAGCTGAGACATGGGTTCAAGACGAAACCCGAAGTCTGATCGGGTTTCGCAGAGAAATGGATGGTCTCTTCAATACTTCCAAG TCAAATAAGCACCTCTGGGAGCAAATTTCTACTAAAATGAGGGATAAAGGTTTCGATCGATCGCCGACTATGTGCACCGACAAGTGGAGGAACTTGTTGA AAGAGTTCAAGAAGGCGAAGCATCAAGATAGGGGAAGTGGGTCTGCTAAAATGTCGTATTACAAGGAGATTGATGAGATTTTGAGGGGAAGGAATAAGAA TTCTCAGTATAAGTGCCCTACTCCTAAAGTTGATTCTTACATGCAATTTTCTGATAAAGGCTTTGAAGATACAAGTATATCATTTGGACCAGTGGAAGCC AGTGCCAGGCCAACACTCAATTTGGAAAGACGTCTGGATCACGATGGACATCCCCTTGCCATCACCGCGGCTGATGCAGTTGCAGCAAGTGGAGTTCCTC CTTGGAATTGGAGGGAGACCCCTGGGAATGGTGCTGAGAGTCAATCATTTGGTGGGAGGGTGATATCAGTCAAATCTGGGGACTACACAAGAAGGATTGG CATTGATGGCACCACAGATGCCATTAGGGAGGCAATCAAGTCTGCTTTCAGATTGAGAACTAAGCGAGCATTCTGGTTGGAGGATGAAGACCAGATAATT CGTGCTCTTGACAGGGACATGCCTTTAGGGAATTACACTCTTCACCTTGATGAAGGGCTAGCTATCAAAGTTTGTCTGTATGATCAGTCAGACCACATCC CAATGCACACTGAAGAGAAAATCTTCTATACTGAAGACGACTACCGTGATTTTCTTTCTCGCCGGGGCTGGACTTGTCTAAGGGAGTTTGATGGCTATAG AAACATTGATAGTATGGATGATCTTCGGCATGATGCTATATACCGAGGCGTGAGTTGA
AA sequence Show only first row Show all	>Potri.008G179700.2 pacid=42808296 polypeptide=Potri.008G179700.2.p locus=Potri.008G179700 ID=Potri.008G179700.2.v4.1 annot-version=v4.1 MYLSEKPRPLDFYKEEVGPSSSRDNMIIEVVSSNGDLPPLHLHPITAATNPHQMILGESSGDDNHEVKAPKKRAETWVQDETRSLIGFRREMDGLFNTSK SNKHLWEQISTKMRDKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGSGSAKMSYYKEIDEILRGRNKNSQYKCPTPKVDSYMQFSDKGFEDTSISFGPVEA SARPTLNLERRLDHDGHPLAITAADAVAASGVPPWNWRETPGNGAESQSFGGRVISVKSGDYTRRIGIDGTTDAIREAIKSAFRLRTKRAFWLEDEDQII RALDRDMPLGNYTLHLDEGLAIKVCLYDQSDHIPMHTEEKIFYTEDDYRDFLSRRGWTCLREFDGYRNIDSMDDLRHDAIYRGVS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Potri.008G179700 [exp]	0	1
AT5G46170			F-box family protein (.1)		Potri.011G082900 [exp]	2.44	0.8114
AT1G29760			Putative adipose-regulatory pr...		Potri.011G072200 [exp]	4.24	0.8259
AT3G62800		DRB4	double-stranded-RNA-binding pr...		Potri.019G037900 [exp]	4.58	0.8028
AT4G32750			unknown protein		Potri.006G241200 [exp]	7.48	0.7816
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Potri.001G093800 [exp]	9.00	0.7241
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.006G011701 [exp]	13.11	0.8014
AT3G07180			GPI transamidase component PIG...		Potri.002G244801 [exp]	13.19	0.7841
AT5G57070			hydroxyproline-rich glycoprote...		Potri.006G145900 [exp]	15.42	0.7674
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Potri.002G110900 [exp]	18.16	0.7091	ZIM.2
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Potri.008G108300 [exp]	23.21	0.7747

Compare expression of checked genes

Potri.008G179700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.