Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26000 330 / 8e-110 Ribonuclease inhibitor (.1) AT3G27290 196 / 2e-58 RNI-like superfamily protein (.1) AT2G01620 120 / 4e-31 MEE11 maternal effect embryo arrest 11, RNI-like superfamily protein (.1) AT2G25490 43 / 0.0005 FBL6, EBF1 EIN3-binding F box protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G054600 [exp] 655 / 0 AT3G26000 395 / 7e-135 Ribonuclease inhibitor (.1) Potri.001G337300 [exp] 298 / 1e-97 AT3G26000 252 / 3e-79 Ribonuclease inhibitor (.1) Potri.010G108600 [exp] 168 / 1e-48 AT2G01620 209 / 8e-66 maternal effect embryo arrest 11, RNI-like superfamily protein (.1) Potri.008G133100 [exp] 66 / 4e-13 AT2G01620 68 / 2e-14 maternal effect embryo arrest 11, RNI-like superfamily protein (.1) Potri.006G254100 [exp] 43 / 0.0005 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037060 [exp] 390 / 6e-133 AT3G26000 337 / 6e-112 Ribonuclease inhibitor (.1) Lus10006438 [exp] 251 / 3e-78 AT3G26000 240 / 1e-73 Ribonuclease inhibitor (.1) Lus10007930 [exp] 127 / 2e-33 AT2G01620 195 / 9e-61 maternal effect embryo arrest 11, RNI-like superfamily protein (.1) Lus10013466 [exp] 118 / 4e-30 AT2G01620 174 / 6e-53 maternal effect embryo arrest 11, RNI-like superfamily protein (.1) Lus10011378 [exp] 87 / 3e-20 AT3G26000 78 / 3e-17 Ribonuclease inhibitor (.1) Lus10038528 [exp] 44 / 0.0002 AT4G05460 249 / 5e-81 RNI-like superfamily protein (.1) Lus10002913 [exp] 44 / 0.0003 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002014 [exp] 43 / 0.0006 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G179800.1 pacid=42808630 polypeptide=Potri.008G179800.1.p locus=Potri.008G179800 ID=Potri.008G179800.1.v4.1 annot-version=v4.1 ATGGCGTTGAATTTTTCGCATCGACCTCTCTTTCCTCGTATTTCCAAGGATAATGTGCGTTCGCCGATGAGGATTTCTATACAGGAGAGAGTTGAGGATC GTTTTGATTATGGAAGGGATAGGAGTGGCTCACAGGAATTGGTGCATAAGGATATCATTGATCTTTTGCCACCGGATCCTTTTGACATGGATATAAGTAC CACTTTTACTGCTATCACGGGGTGGCTTGAGGATTTGGAGGTGGATTATGGTGCTTGTGGTAGTGATCAGGTTTCCACGAGTGATGGGAATTATCAGTTG TTTGCTGGCTTGAATTATATCTGGAATAATGCTATGAGGTTTCAAGCATTTCCAGGGAATGTGGGGTTTAGTTGTAAATCTAATTTAGTGGGTGGGTTTG GTGATGAGTGTCTAGAGGGGATAGAAGTGGGGAATGCATCTGTTCACGAGGCTCCTGACTCAGATTGTGACATGAAGGATGTTTTGAGCCTGGGGAATGA AATGGATAAGAATGCTGGGGTCGTGGATGAGAGCAGTGGAGAATTCCAAAAGGGTCACGTGGTTTTTTCTAATGGAGCTCCTCATCCAGCGTTTGCTTTT GCTCTTGGTTATCTGGGAGTGCAGGATCTTCTTCTTGTTGAAACTGTTTGCAGATCCCTTCGTTATACCGTTCGAAGTGACCCTCTTTTATGGAGGAGCA TCCACATAGATCAACCATTGAATGAGAAGATCACTGAAGATGTTCTTTTGCAGTTAACTGATAGGGCTCAAGGTAACTTGCAATGTCTGAGCCTAGTGAA GTGTCCTAGGATTACTGATGATGGGTTGAAGCAGGTGCTCAAAAGTAATCCAAGGCTGACCAAGTTGAGTGTGCCTGGATGTACAAGACTTAGCATTGAG GGCATTGTGACCAGCTTAAAGGCATTCAAGACTACAGGAGCTCAGGGAGTGAAGCATTTACGCATTGGCGGGGTCTATGGTGTGACACAGAAGCATTTTG AAGAGTTGACGCTCTTGTTGGGCCGAGATAGCCACACCCAGCAGAATGTTCACAAGCCACATTTTTATCACAGGGCAGATTTTTATCTGTCATGTGAGGA TGATCATGCAATTGATATTGAAATGTGCCCAAGATGCCAGAACCTGCGACTAGTTTATGATTGCCCTGCAGAGGGTTGCCGGGGAAATGAGCATCCCTCT CGGGCTTGTAGGGCTTGCACCCTTTGCATTGCACGGTGTGTCTAG
AA sequence Show only first row Show all	>Potri.008G179800.1 pacid=42808630 polypeptide=Potri.008G179800.1.p locus=Potri.008G179800 ID=Potri.008G179800.1.v4.1 annot-version=v4.1 MALNFSHRPLFPRISKDNVRSPMRISIQERVEDRFDYGRDRSGSQELVHKDIIDLLPPDPFDMDISTTFTAITGWLEDLEVDYGACGSDQVSTSDGNYQL FAGLNYIWNNAMRFQAFPGNVGFSCKSNLVGGFGDECLEGIEVGNASVHEAPDSDCDMKDVLSLGNEMDKNAGVVDESSGEFQKGHVVFSNGAPHPAFAF ALGYLGVQDLLLVETVCRSLRYTVRSDPLLWRSIHIDQPLNEKITEDVLLQLTDRAQGNLQCLSLVKCPRITDDGLKQVLKSNPRLTKLSVPGCTRLSIE GIVTSLKAFKTTGAQGVKHLRIGGVYGVTQKHFEELTLLLGRDSHTQQNVHKPHFYHRADFYLSCEDDHAIDIEMCPRCQNLRLVYDCPAEGCRGNEHPS RACRACTLCIARCV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26000			Ribonuclease inhibitor (.1)		Potri.008G179800 [exp]	0	1
AT2G16950		ATTRN1	transportin 1 (.1.2)		Potri.009G138200 [exp]	2.23	0.9162
AT5G01460			LMBR1-like membrane protein (....		Potri.016G116200 [exp]	6.70	0.8950
AT5G60580			RING/U-box superfamily protein...		Potri.006G024000 [exp]	6.78	0.8952
AT1G09740			Adenine nucleotide alpha hydro...		Potri.005G157100 [exp]	8.48	0.8826
AT3G12150			unknown protein		Potri.006G058400 [exp]	10.95	0.8673
AT1G13630			Tetratricopeptide repeat (TPR)...		Potri.010G137200 [exp]	11.04	0.8372
AT4G24840			unknown protein		Potri.012G096100 [exp]	12.84	0.8888
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.002G254600 [exp]	14.73	0.8833
AT5G22850			Eukaryotic aspartyl protease f...		Potri.009G001700 [exp]	15.16	0.8216
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.006G109200 [exp]	17.94	0.8637

Compare expression of checked genes

Potri.008G179800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.