Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26020 713 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT1G13460 694 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT4G15415 685 / 0 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G21650 665 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 622 / 0 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT3G09880 587 / 0 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G03470 571 / 0 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G25510 541 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G54930 498 / 4e-173 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G054300 [exp] 947 / 0 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.017G070100 [exp] 796 / 0 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.008G179900 [exp] 751 / 0 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.010G054400 [exp] 740 / 0 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.014G157000 [exp] 708 / 0 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.002G226200 [exp] 690 / 0 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.016G098400 [exp] 602 / 0 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G122300 [exp] 591 / 0 AT3G09880 692 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G247100 [exp] 546 / 0 AT5G25510 800 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032082 [exp] 759 / 0 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10030002 [exp] 701 / 0 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10006440 [exp] 698 / 0 AT3G26020 651 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10035321 [exp] 695 / 0 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10011381 [exp] 693 / 0 AT3G26020 643 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10015144 [exp] 689 / 0 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10036926 [exp] 676 / 0 AT3G26020 709 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10037057 [exp] 675 / 0 AT3G26020 707 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10031536 [exp] 660 / 0 AT3G26020 724 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10014619 [exp] 607 / 0 AT4G15415 604 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01603 [poplar] [flax] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Potri.008G180000.4 pacid=42805961 polypeptide=Potri.008G180000.4.p locus=Potri.008G180000 ID=Potri.008G180000.4.v4.1 annot-version=v4.1 ATGATCAAACAAATACTTGGTAGGCTTCCGAAGAAGCCTTCGAAGTCATCTGAGAATCGCGAATTTGGGGGTCCATCTGTTGCCCCTTCAAGTACTTCAT CTGCTTCTAAAAGCACTAGTGATTTCCAGAGCAACAGGCCTGGAACTTTAAACAATTCGTCTCCTCCTGGTCCTGATTCTGCTCCGCATTTAGGTTATAG TCATGGAATGAAGCCTACCCAGGTTGTGAATCCGAAGCTGAATGGCAGTTCAGTGCCTGCTCCGTATGAAGCATTGCCTGGATTTAGGGATGTCCCGAAC TCTGAGAAGCAAAACTTGTTTATTAGAAAGCTCAACTTGTGTTGTGTGGTGTTCGACTTCACTGACCCTACTAAGAATTTGAAAGAAAAGGACATCAAGC GCCAGACTCTGCTTGAGCTTGTGGATTATGTTACTTCTGCAAATGGGAAGTTCACGGAAACTGTCATGCAAGAAGTTATAAAGATGGTATCAGTTAATTT GTTTAGGCCGCTTACTCCACACCCCCGGGAGAATAAGTTATCAGAGGCCTTTGATTTAGAAGAAGAGGAGCCCATGATGGACCCGGCATGGCCACACCTA CAGATCGTGTATGAATTCTTTCTTAGATTTGTAGCATCACCCGAGACAGATGCAAAGTTGGCTAAGAGGTATGTTGATCACGCATTTGTTCTCAAGTTGT TAGATCTCTTTGATTCTGAGGATCCAAGGGAGAGAGAGTATCTGAAGACAATTCTACATCGTATCTATGGAAAATTTATGGTGCATCGCCCATTCATCAG GAAGGCTATCAATAATATCTTCTTCCGTTTTATTTTTGAGACAGAGAAGCATAATGGGATTGCTGAGCTTTTAGAGGTTTTGGGTAGCATAATCAATGGG TTTGCTTTGCCGCTAAAAGAAGAACACAAATTGTTCCTTGTTCGGGCATTGATCCCTCTTCACAAGCCAAGGTGTTTACCAATGTACCACCAGCAATTAT CATACTCCATTACACAGTTCGTGGAGAAAGACTGCAAGCTTACTGATACTGTTATAAGGGGTTTGTTAAAATACTGGCCAATTACTAATAGTTCCAAGGA GGTCATGTTCCTAAGTGAGCTGGAGGAAGTCTTAGAAGCAACTCAGCCTGCAGAATTTCAAAGATGTATGGTACCCCTGTTTCGTCAAGTAGCTCATTGC TTGAGCAGTTCACACTTCCAGGTGGCCGAAAGGGCTTTGTACTTGTGGAACAATGATCATATCGAGAACTTAATTAGACAGAACAGCAAAGCTATACTCC CCATTATCTTCCCTGCCCTGGAGAAAAATGGACGTAACCACTGGAATCAGGTGGTGCAGAGCTTAACAGTTAATGTTCGCAAGATTTTTGCTGATACTGA CCCCGAGCTGTTCGAGGAGTGCTTGCGCCAGTTTCAAGAAAAAGAAGCGAAGGCAGAGGAGTTCAAAACAAAACAAGAAGCCACCTGGAAGCGCTTAGAA GAGATTGCCGCAACTAAAGCTGCGAGCAGTGAAGCAGTCCTTGTTCCCCATGCTATACCCACCTTAACATCGTCCAGCTAG
AA sequence Show only first row Show all	>Potri.008G180000.4 pacid=42805961 polypeptide=Potri.008G180000.4.p locus=Potri.008G180000 ID=Potri.008G180000.4.v4.1 annot-version=v4.1 MIKQILGRLPKKPSKSSENREFGGPSVAPSSTSSASKSTSDFQSNRPGTLNNSSPPGPDSAPHLGYSHGMKPTQVVNPKLNGSSVPAPYEALPGFRDVPN SEKQNLFIRKLNLCCVVFDFTDPTKNLKEKDIKRQTLLELVDYVTSANGKFTETVMQEVIKMVSVNLFRPLTPHPRENKLSEAFDLEEEEPMMDPAWPHL QIVYEFFLRFVASPETDAKLAKRYVDHAFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIING FALPLKEEHKLFLVRALIPLHKPRCLPMYHQQLSYSITQFVEKDCKLTDTVIRGLLKYWPITNSSKEVMFLSELEEVLEATQPAEFQRCMVPLFRQVAHC LSSSHFQVAERALYLWNNDHIENLIRQNSKAILPIIFPALEKNGRNHWNQVVQSLTVNVRKIFADTDPELFEECLRQFQEKEAKAEEFKTKQEATWKRLE EIAATKAASSEAVLVPHAIPTLTSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26020			Protein phosphatase 2A regulat...		Potri.008G180000 [exp]	0	1
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.007G057850 [exp]	3.00	0.8791
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039000 [exp]	3.74	0.8662
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Potri.010G235801 [exp]	3.87	0.8727
AT3G22520			unknown protein		Potri.010G086700 [exp]	4.58	0.8351
AT2G18220			Noc2p family (.1)		Potri.003G213450 [exp]	6.63	0.8817
AT5G46250			RNA-binding protein (.1.2.3)		Potri.011G080700 [exp]	6.70	0.8557
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.013G029800 [exp]	8.36	0.8252	DHQD2
AT5G02880		UPL4	ubiquitin-protein ligase 4 (.1...		Potri.016G085200 [exp]	8.36	0.8539
					Potri.007G016466 [exp]	8.94	0.8370
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.010G057900 [exp]	9.21	0.8387

Compare expression of checked genes

Potri.008G180000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.