Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50575 361 / 1e-125 Putative lysine decarboxylase family protein (.1) AT3G53450 50 / 3e-07 LOG4 LONELY GUY 4, Putative lysine decarboxylase family protein (.1) AT2G37210 49 / 6e-07 LOG3 LONELY GUY 3, lysine decarboxylase family protein (.1.2) AT5G06300 49 / 1e-06 LOG7 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) AT2G28305 46 / 8e-06 ATLOG1 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) AT4G35190 45 / 2e-05 LOG5 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) AT5G03270 42 / 0.0003 LOG6 LONELY GUY 6, lysine decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G248900 [exp] 50 / 3e-07 AT4G35190 297 / 7e-103 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.009G010800 [exp] 50 / 3e-07 AT2G28305 359 / 8e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.006G127400 [exp] 50 / 5e-07 AT2G37210 396 / 3e-142 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.002G024000 [exp] 49 / 8e-07 AT2G37210 310 / 2e-108 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.004G212200 [exp] 49 / 8e-07 AT2G28305 361 / 1e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.005G237600 [exp] 48 / 2e-06 AT5G06300 338 / 2e-119 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Potri.016G090500 [exp] 47 / 3e-06 AT2G37210 392 / 8e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.002G012500 [exp] 47 / 4e-06 AT4G35190 300 / 5e-104 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.006G204800 [exp] 47 / 6e-06 AT5G06300 316 / 9e-111 LONELY GUY 7, Putative lysine decarboxylase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016588 [exp] 376 / 1e-131 AT1G50575 330 / 3e-113 Putative lysine decarboxylase family protein (.1) Lus10003762 [exp] 314 / 4e-108 AT1G50575 285 / 7e-97 Putative lysine decarboxylase family protein (.1) Lus10026513 [exp] 56 / 5e-09 AT2G37210 394 / 1e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10021462 [exp] 50 / 7e-07 AT2G28305 386 / 1e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10016096 [exp] 49 / 1e-06 AT2G28305 384 / 7e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10025117 [exp] 45 / 2e-05 AT4G35190 373 / 1e-132 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10012436 [exp] 45 / 2e-05 AT5G06300 332 / 7e-117 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Lus10004222 [exp] 45 / 2e-05 AT5G06300 293 / 1e-102 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Lus10023190 [exp] 45 / 3e-05 AT2G37210 364 / 6e-130 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10022638 [exp] 45 / 4e-05 AT4G35190 365 / 2e-129 LONELY GUY 5, Putative lysine decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0349 [poplar] [flax] SLOG PF03641 [poplar] [flax] Lysine_decarbox Possible lysine decarboxylase
Representative CDS sequence Show only first row Show all	>Potri.008G180300.1 pacid=42807250 polypeptide=Potri.008G180300.1.p locus=Potri.008G180300 ID=Potri.008G180300.1.v4.1 annot-version=v4.1 ATGGGTTTTTCAATTGGGTGTTCACTGGGTTCTCGTGTTTTGGTGAGGAATACTGGAAAGTTTCCACCTTTATGTAGAAAAGAGAGGCTTAATCTTAGCA CTATGTGCTCAGAATTTAATAAGCCTTGCAAAATAAGAGTTTCACTCTGCAAGAGTGAATTGGTTGACTTTGATGAGAGAACAAGCCCAACCGAGATCAG AAAAGAGATAGGGAGATGCTATGAACTCATACATAGGCTTGGAAGGGGAGTTGTTTATTTGGGTTCTTCGAGAATGGGACCTGATCATCCACATTATTCG CAAGCACTAGAGTTGGGTAGAGAGGTTGCAAATCTTTTGGACTGCACATCATGGACTGGGGCTGGTCCAGGCCTAATGGATGCTGCTACTAAAGGCGCAC TTGAAGCAGGAAAGCCTGTAGGTGGATTTAAGATAGCTAAAGAAGCTGGCGAATGGACGGCCTCGAATTTTCATTCTTACCTACCGTCAGAAACTTATCT TACATGCAGGTTTTTTTCTGCAAGAAAGCATGGTTTGGTGGATGCTGCTGTTAGGAGTAGTTGTTCAGATAGGACTGCTGTAGTTGCTCTTCCTGGTGGA ATTGGTACTTTAGATGAGATGTTTGAGATTTTAACACTGATTCAACTACAAAGAATTGGATCAGAGCTTCCAGTTCCCTTCCTTGTGATGAACTATGACT CGTACTACCAGAAGCTCTTAGACTTTCTTGGTGATTGTGAGAATTGGGGTACTGTCTCTAAAGGAGAAGTTGCATCCCTGTGGAAAATTTGTGAAAACAA CTCGGAAGCTCTGGCCTACTTGGCAGATTTCTATGGCCTCCCTTCTAGTGGTGAAGAGAGACGTGAAGTAAGCTTACACGTGCAAATCGAATAA
AA sequence Show only first row Show all	>Potri.008G180300.1 pacid=42807250 polypeptide=Potri.008G180300.1.p locus=Potri.008G180300 ID=Potri.008G180300.1.v4.1 annot-version=v4.1 MGFSIGCSLGSRVLVRNTGKFPPLCRKERLNLSTMCSEFNKPCKIRVSLCKSELVDFDERTSPTEIRKEIGRCYELIHRLGRGVVYLGSSRMGPDHPHYS QALELGREVANLLDCTSWTGAGPGLMDAATKGALEAGKPVGGFKIAKEAGEWTASNFHSYLPSETYLTCRFFSARKHGLVDAAVRSSCSDRTAVVALPGG IGTLDEMFEILTLIQLQRIGSELPVPFLVMNYDSYYQKLLDFLGDCENWGTVSKGEVASLWKICENNSEALAYLADFYGLPSSGEERREVSLHVQIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50575			Putative lysine decarboxylase ...		Potri.008G180300 [exp]	0	1
AT4G17070			peptidyl-prolyl cis-trans isom...		Potri.014G051300 [exp]	2.23	0.9393
AT2G45630			D-isomer specific 2-hydroxyaci...		Potri.002G151100 [exp]	3.74	0.8967
AT2G23200			Protein kinase superfamily pro...		Potri.005G143200 [exp]	8.24	0.8850
AT2G22650			FAD-dependent oxidoreductase f...		Potri.018G112600 [exp]	11.83	0.9064
AT1G01970			Tetratricopeptide repeat (TPR)...		Potri.014G070500 [exp]	12.72	0.9238
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Potri.009G096700 [exp]	16.06	0.8686
AT1G54730			Major facilitator superfamily ...		Potri.005G040000 [exp]	22.44	0.8825
AT4G31990		AAT3, ATAAT1, A...	ASPARTATE AMINOTRANSFERASE DEF...		Potri.018G022200 [exp]	22.97	0.9077	Pt-AAT2.2
AT2G02590			unknown protein		Potri.010G034400 [exp]	23.49	0.8804
AT5G42850			Thioredoxin superfamily protei...		Potri.001G225500 [exp]	23.91	0.8581

Compare expression of checked genes

Potri.008G180300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.