Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27320 569 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G14310 550 / 0 ATCXE16 carboxyesterase 16 (.1) AT3G63010 144 / 2e-39 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 139 / 1e-37 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT5G27320 138 / 2e-37 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 116 / 2e-29 ATCXE20 carboxyesterase 20 (.1) AT2G45600 108 / 2e-26 alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 107 / 4e-26 ATCXE18 carboxyesterase 18 (.1) AT3G48700 105 / 1e-25 ATCXE13 carboxyesterase 13 (.1) AT2G45610 105 / 1e-25 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G053700 [exp] 761 / 0 AT3G27320 563 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G180500 [exp] 680 / 0 AT3G27320 563 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G192650 [exp] 146 / 2e-40 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Potri.003G192600 [exp] 143 / 2e-39 AT1G68620 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G040600 [exp] 140 / 2e-38 AT5G27320 570 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.013G028700 [exp] 140 / 6e-38 AT5G27320 608 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G032400 [exp] 139 / 1e-37 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G135900 [exp] 129 / 8e-34 AT3G63010 537 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.019G014302 [exp] 125 / 2e-32 AT5G23530 329 / 3e-112 carboxyesterase 18 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036931 [exp] 538 / 0 AT3G27320 476 / 9e-168 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10037056 [exp] 538 / 0 AT3G27320 476 / 5e-168 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10022326 [exp] 499 / 4e-176 AT3G27320 660 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10002254 [exp] 134 / 6e-36 AT5G27320 550 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10000928 [exp] 132 / 4e-35 AT5G27320 553 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10039162 [exp] 130 / 1e-34 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10008439 [exp] 127 / 3e-33 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013774 [exp] 126 / 9e-33 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10036168 [exp] 125 / 2e-32 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10027969 [exp] 123 / 9e-32 AT3G63010 566 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00135 [poplar] [flax] COesterase Carboxylesterase family
Representative CDS sequence Show only first row Show all	>Potri.008G180600.1 pacid=42806046 polypeptide=Potri.008G180600.1.p locus=Potri.008G180600 ID=Potri.008G180600.1.v4.1 annot-version=v4.1 ATGCCAAACTTAATTGTAAAACTCTACAGTGTCATCTTCAAATATCAACAAAAACACCTCCTACAAAGCCTCATCGAAACCCCTGAATCCACCAAACCCA ACCCATTTGGCATAACTTCTCGGCCCAGCGAATCCATCGCAGCTAGTAACCCATCATTTTCCGACGGTGTCGCCACCAAAGACATACATGTCGACCCCTA CTCTTCTCTATCTCTCCGGATCTTCCTTCCCGATACAGCTGTCACCTCCTCATTGTCTTCTACCTATCAAATTACCAATTACGGTGGGTATTCTCCGGCG GAAGGAAAATCTCACCGGAAGTTGCCGGTGATGTTGCAGTTTCACGGAGGCGGGTTTGTCAGCGGGAGCAATGAGTCGGTAGGAAACGATGCGTTTTGCA GGAGAATAGCCAAATTGTGTGATGTGATTGTCGTGGCTGTTGGGTATCGATTGGCACCAGAGACCAAGTATCCTGGGGCTTTCGAAGATGGTTTCAAGGT TTTGAATTGGTTAGCAAAGCAGGCTAATTTGGCTGTTTGTGGGAGAGTGGGTGCTCAAAGCCATATGTTTGATAGCTTTGGGGCTTCCATGGTCGAGCCC TGGTTGGCTGCTCATGGAGATACTTCCAGATGTGTATTACTTGGGGTGAGCTCTGGTGCAAACATAGCAGATTATGTGGCAAGAGAGGCTGTAGAGGCTG GGAAGCGATTGGATCCAGTTAAGGTGGTGGCACAAATCTTGATGTTTCCTTTCTTTATCGGAAGCACTCCCACCCATTCTGAGATTAAGCTTGCAAGCTC ATATTTCTATGATAAGACCATGTGCATGTTGGCATGGAAACTCTTTCTACCTAAGGAAGAGTTCAACCTAGATCACCCAGCTGCTAATCCTCTTATTGCT GGGAGGCAGCCACCTCTTAAGTGCATGCCCCCGACTCTAACAGTTGTGGCAGAGCATGACTTTATGAGAGATCGAGCCATTGCCTACTCTGAAGAACTAC GGAAAGTTAATGTAGATGCACCTCTTCTTGATTATAAGGATGGTGTGCATGAGTTTGCTACTCTTGATGTGCTTCTCCAAACACCACAGGCCCGGGTATG TGCAGAGGATGTCTCTATATGGGTCAAGAAGTACATATCACTCCGAGGCCATGAGTTTTCTTATTGA
AA sequence Show only first row Show all	>Potri.008G180600.1 pacid=42806046 polypeptide=Potri.008G180600.1.p locus=Potri.008G180600 ID=Potri.008G180600.1.v4.1 annot-version=v4.1 MPNLIVKLYSVIFKYQQKHLLQSLIETPESTKPNPFGITSRPSESIAASNPSFSDGVATKDIHVDPYSSLSLRIFLPDTAVTSSLSSTYQITNYGGYSPA EGKSHRKLPVMLQFHGGGFVSGSNESVGNDAFCRRIAKLCDVIVVAVGYRLAPETKYPGAFEDGFKVLNWLAKQANLAVCGRVGAQSHMFDSFGASMVEP WLAAHGDTSRCVLLGVSSGANIADYVAREAVEAGKRLDPVKVVAQILMFPFFIGSTPTHSEIKLASSYFYDKTMCMLAWKLFLPKEEFNLDHPAANPLIA GRQPPLKCMPPTLTVVAEHDFMRDRAIAYSEELRKVNVDAPLLDYKDGVHEFATLDVLLQTPQARVCAEDVSIWVKKYISLRGHEFSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27320			alpha/beta-Hydrolases superfam...		Potri.008G180600 [exp]	0	1
AT5G26667		PYR6	P-loop containing nucleoside t...		Potri.002G134600 [exp]	1.41	0.9320
AT1G77140		ATVPS45, VPS45	vacuolar protein sorting 45 (....		Potri.002G071600 [exp]	3.46	0.9104	Pt-VPS45.2
AT5G18580		FASS2, TON2, GD...	GORDO, FASS 1, EMBRYO DEFECTIV...		Potri.010G022300 [exp]	7.48	0.9226
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Potri.001G185300 [exp]	8.06	0.8972
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Potri.003G120000 [exp]	8.77	0.9079
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Potri.006G214000 [exp]	9.48	0.9153
AT5G62700		atgcp3, TUB3	tubulin beta chain 3 (.1)		Potri.001G272700 [exp]	10.58	0.9209
AT3G12955			SAUR-like auxin-responsive pro...		Potri.001G458000 [exp]	13.96	0.9220	SAUR4
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Potri.009G085100 [exp]	15.49	0.9072
AT2G14835			RING/U-box superfamily protein...		Potri.009G089100 [exp]	16.12	0.8741

Compare expression of checked genes

Potri.008G180600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.