Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02710 427 / 6e-149 PLPC, PLPB, PLPA, PLP PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) AT5G58140 193 / 3e-55 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G45780 117 / 2e-28 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT1G68050 62 / 4e-10 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT5G57360 56 / 4e-08 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G18915 54 / 8e-08 ADO2, LKP2 ADAGIO 2, LOV KELCH protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G053500 [exp] 644 / 0 AT2G02710 431 / 2e-150 PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) Potri.009G170640 [exp] 167 / 1e-45 AT5G58140 825 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.001G342000 [exp] 122 / 6e-30 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.004G209700 [exp] 121 / 1e-29 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.010G105700 [exp] 59 / 3e-09 AT1G68050 977 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.008G135200 [exp] 57 / 1e-08 AT1G68050 968 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.018G090800 [exp] 57 / 2e-08 AT5G57360 1042 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.006G166300 [exp] 54 / 1e-07 AT5G57360 972 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037216 [exp] 454 / 2e-159 AT2G02710 425 / 2e-148 PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) Lus10036711 [exp] 419 / 2e-145 AT2G02710 389 / 1e-133 PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) Lus10036144 [exp] 121 / 1e-29 AT3G45780 1061 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10018122 [exp] 121 / 1e-29 AT3G45780 1191 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10026572 [exp] 120 / 3e-29 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001355 [exp] 119 / 9e-29 AT5G58140 1141 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001604 [exp] 96 / 7e-21 AT5G58140 1218 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10013856 [exp] 72 / 2e-13 AT5G58140 368 / 8e-120 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10030757 [exp] 63 / 2e-10 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10019169 [exp] 62 / 3e-10 AT1G68050 969 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0183 [poplar] [flax] PAS_Fold PF13426 [poplar] [flax] PAS_9 PAS domain
Representative CDS sequence Show only first row Show all	>Potri.008G180700.1 pacid=42807503 polypeptide=Potri.008G180700.1.p locus=Potri.008G180700 ID=Potri.008G180700.1.v4.1 annot-version=v4.1 ATGGAATCACAATTGGCTCCAATTGAGCAATCCCTCAATGCCAGGTACTCTCTCTGGGTGCGAGAAGATCTCGATGAATTGCGTCACAATTTCACCATCA CTGACCCCAACATTACGGGTCACCCTATAGTGTTTGCAAGCCCTGGGTTCCTTAAAATGTCGGGTTTTTCGAGAGAGCAAGTGGTGGGGAACAACGGCAG GATATTTCAAGGCCCCAAGACTAACAGAAAAACAGTTATGGAGATCCGGGAGGCAATTCGCGAGGAGAGGGCGGTGCGAGTTCGTTTGTTGAATTATCGG AAAGATGGGACGCCCTTTTGGATGTTGTTTCAGATGAGCCCTGTTTTTAGCAAGGAGGATGGCGGCGTCGTTCATTTCATTGGGGTTCAGGTGCCTATAC GGAGAAACAAAAAATTAACTGATGATGGGGCTGATGCTGCTTGTAACGAGATTGCTTTTGGTTCCTGCAGGAGAGAGGTTTGCTCTGATTCTTTGGTGGA ATTGACACGCGTTTTGGCATTGGATACGGATACCAATTGTAAAGGAGTAAAGATTGAAGAGTCATGCGAGGCAAGCGAACTAGAGAAGCAAAGAGCTGCA ACTGCCATTAATGACATCTTGTCCGTGCTAACCGGCTGTAGTGAGTCAACTGGTAGAATGGTGTGTGGAAAAAGGTGCAGCTTACCGGCGGCTGGCCTCA TTAATTCATCTTTAAATATATCTCTTGGTAGAATCAAGCAAAGCTTTGTATTGATAGATCCACACTTGCCTAACATGCCTGTAGTTTACGCAAGTGATGC CTTCTTAAAACTGACAGGTTATGATAGACATGAAGTGTTAGGACGTGATTGGAATTTTCTCAATGGAGTTGATACAGATTCCTCAATTTTGCATCAGGTA CAGGAAAGCATTCAGGTTGAGCAACCATGCACAGTTTGTATCTTAAATTACAGGAAAGACAAGAGTACATTTTGGAATCTTCTTCACATGTCACCTGTTC GTAATGCTACTGGCAAGATAGCATACTTTGTGGGTGTTCAGATGGAAGAAAAATGTAAGAGCCAGGACAGACGTGGGCTGAGTCCTGAGATTAGGCAGCT TGGTGCTGTTGGTGCAGTCAAGGTAGCTGTAAGGAGCTTATCGATAAGTGCTAGCTGCTCCAGGTCATCAGATGGTTTCAATAATCTTTGA
AA sequence Show only first row Show all	>Potri.008G180700.1 pacid=42807503 polypeptide=Potri.008G180700.1.p locus=Potri.008G180700 ID=Potri.008G180700.1.v4.1 annot-version=v4.1 MESQLAPIEQSLNARYSLWVREDLDELRHNFTITDPNITGHPIVFASPGFLKMSGFSREQVVGNNGRIFQGPKTNRKTVMEIREAIREERAVRVRLLNYR KDGTPFWMLFQMSPVFSKEDGGVVHFIGVQVPIRRNKKLTDDGADAACNEIAFGSCRREVCSDSLVELTRVLALDTDTNCKGVKIEESCEASELEKQRAA TAINDILSVLTGCSESTGRMVCGKRCSLPAAGLINSSLNISLGRIKQSFVLIDPHLPNMPVVYASDAFLKLTGYDRHEVLGRDWNFLNGVDTDSSILHQV QESIQVEQPCTVCILNYRKDKSTFWNLLHMSPVRNATGKIAYFVGVQMEEKCKSQDRRGLSPEIRQLGAVGAVKVAVRSLSISASCSRSSDGFNNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Potri.008G180700 [exp]	0	1
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Potri.018G131700 [exp]	7.21	0.8611
AT5G57700			BNR/Asp-box repeat family prot...		Potri.006G175161 [exp]	10.00	0.8561
AT3G20060		UBC19	ubiquitin-conjugating enzyme19...		Potri.008G041300 [exp]	14.28	0.7824
AT2G04690			Pyridoxamine 5'-phosphate oxid...		Potri.001G470300 [exp]	21.35	0.7788
AT2G43210			Ubiquitin-like superfamily pro...		Potri.017G036600 [exp]	21.49	0.7689
AT3G53690			RING/U-box superfamily protein...		Potri.013G120300 [exp]	22.44	0.7925
AT4G10150			RING/U-box superfamily protein...		Potri.014G076800 [exp]	23.32	0.8508
AT4G15563			unknown protein		Potri.008G204800 [exp]	24.04	0.8211
					Potri.007G026200 [exp]	24.18	0.7509
AT3G53810			Concanavalin A-like lectin pro...		Potri.009G035800 [exp]	25.37	0.7859

Compare expression of checked genes

Potri.008G180700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.