Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26050 119 / 4e-28 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G40700 106 / 2e-25 unknown protein AT3G27350 103 / 2e-24 unknown protein AT3G01710 96 / 5e-21 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT2G25480 81 / 4e-16 TPX2 (targeting protein for Xklp2) protein family (.1) AT4G32330 81 / 6e-16 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) AT2G35880 78 / 4e-15 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G24160 76 / 2e-14 unknown protein AT1G70950 75 / 4e-14 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G70100 74 / 1e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G053200 [exp] 364 / 8e-119 AT3G26050 113 / 1e-26 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.001G336300 [exp] 133 / 7e-33 AT3G27350 124 / 1e-31 unknown protein Potri.010G113000 [exp] 85 / 8e-17 AT1G70950 147 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G192800 [exp] 83 / 2e-16 AT1G70100 197 / 6e-57 unknown protein Potri.008G129300 [exp] 82 / 5e-16 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G038100 [exp] 82 / 5e-16 AT1G70100 196 / 4e-56 unknown protein Potri.006G254400 [exp] 78 / 5e-15 AT4G32330 288 / 2e-93 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.019G075700 [exp] 78 / 9e-15 AT5G40700 74 / 1e-14 unknown protein Potri.018G027500 [exp] 77 / 9e-15 AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037054 [exp] 145 / 1e-36 AT3G26050 132 / 9e-33 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10002915 [exp] 85 / 2e-17 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10029213 [exp] 83 / 2e-17 AT1G24160 135 / 2e-36 unknown protein Lus10032115 [exp] 85 / 4e-17 AT3G01710 181 / 4e-52 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10010725 [exp] 84 / 8e-17 AT1G70100 213 / 2e-62 unknown protein Lus10014571 [exp] 78 / 9e-15 AT3G01710 100 / 1e-22 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10016193 [exp] 77 / 1e-14 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10029355 [exp] 73 / 3e-13 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10022213 [exp] 71 / 1e-12 AT3G23090 220 / 2e-68 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10021223 [exp] 68 / 6e-12 AT3G23090 230 / 4e-73 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [poplar] [flax] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Potri.008G180900.1 pacid=42807405 polypeptide=Potri.008G180900.1.p locus=Potri.008G180900 ID=Potri.008G180900.1.v4.1 annot-version=v4.1 ATGGGAGAATCAGCTTGTCTTTTGAGATCCTTTTCTCATCCATCTAGTGCTTCCAGAGAAGCCAAAGAGGACAATCCAATTCGAGCGCTGACCGAATCAA TCTCATTCGGGAGATTTATGTCAGAATCTTTGGCTTGGGAGAAGTGGTCAACCTTTAGTCACAATCGCTACTTGGAAGAAGTTGAGCAGTTTTCCAAGCC AGGTTCTGTTGCCCAGAAGAAAGCATATTTTGAGGCTCATTACAAGAAGAGGGCTGCCATGAAAGCAGCAGCCTTGCTTGAGCAAGCGAACGCGGCATCT AATGTTCCTGAAGTAGAAGCTGCAGACGAGGCTCTCAATAGCTCTCATGTTAATTCGGAGCTTCCCAAAGAAACCAATGATGTGATCATCAATGAACAAG ATGAGGGGAGTGTTGATGCTGGCGTAATTCAGTCCTCTGATGCGAATGCGTTTTATGCTGACGAGCTAAAGGATAATTTACAAAATGCGAAGGAAGAAGG AAATGAAGAGGTGAGAGAAAAAAATGTTGCAATGGAAAACTCTATTCAGGTGGAAAATGTAAAGGAGAACGAAAATGCTGAAGACTCTGACATTATTGTG GCCATGCCAGAAGAGAAAATACCCAATAAGGTAAGTTGCCATTCCAATCAGGTAGCTGCTGAAGAGGAGAATGTAACTTTACCAAGTAAGGAAAGGCAAT CAAAATCATCGAGTCAGAGTAGAGCATCAATACTCCCCAAGTCTTCTGCCAAACCTCCGAGTTCAGCAAGACTAAGAGCTGAAACAAATGATACTCCAAA CATTAAGAAGTCTGCTGGAGAATTGATGAATAAAAAGAGAGTAACTCCGAAATCTATCCACATGTCAATTAATTTTGCTTCTCAATTTCAAGACACCAGT GAAAGTTCTCTCAGAGTATCTAAATTCAGGTCCGCTACTCCAGAAATTCCAACCAAGGTCGCAAATGCAAAGCAGATTGAAAATGCTCAGGACAGTGACA CGGCCAATAAGGTAAGTTGCCATTCCACTCAGGTAGCTGCTGAAGAGGAGAATGTAGCTTTACCAAGTAATAAAAGGCAAATGAGTTCTTCATCAAAATC ATCTAGTCAGAGTAGAGCAACGAAACTCCCAAAGTCTTCTGCCAAACTGTCAAGTTCCACAAGACTAAGAGCTGAAACAAATGCAACTACAAACAGTAAG AAGTCTGCTGGAGGATTGATGGACAGAAAGGGAGTAACTCAGAAATCTATCCACATGTCAATCAATTTTTCTTCTCGTTTGCAAGACACCAATAAAAGTT CTCTCAGAGTATCTAAAGACATGTCCGCTACTCCAGAAATTTCAACCAAGGGATCTGTTTATGGTGTATCAAAGCTTCTCCCTTCAGTATTTCGGCGTTC ACAAGATAGAAGAACTAAGTCAGAGCTCAACAAGTCAGTTTCAGGAAAAATTACAGCAGGTGGAATATCGCAGATGCTCTCTTCAGACTGCTCGAAATCT TCAAGTGCAAAGGGAAGCAAATCACGACCTCCACTTATCTCCTCTCCATTTAGCTTTAGAAGTGATGAAAGAGCGGCAAAAAGAAAAGAGTTCTTTGAGA AGCTTGGAGAGAAAAACAATGCAAAGGAGGACACAGAAAAAAAGCATCTGCAAGCAAGACCTAAGGAGAAGGCAGAGTATGACATTAAGAAACCAAGGCA GAGTGCTGTCTTCGGGGGGAAGCCAAGAGATGACTTGCATCAAGGTTTGCGGTCTCCAGAAAATTCAACGATGAAGATCCCGTTGACTCGACCTCGATCA CCGAAACTTGGGAGGAAGTCAACCTCCAATGTGGCAAGCTCCAAGCCTGTTATCCAGAGAAGTAACCATAGCTCAACTCGCTCAATCACCTTGCTACCGA AGAAGAACACACATGAGAATGCTTCTCCAAATATCCAGTCGTGA
AA sequence Show only first row Show all	>Potri.008G180900.1 pacid=42807405 polypeptide=Potri.008G180900.1.p locus=Potri.008G180900 ID=Potri.008G180900.1.v4.1 annot-version=v4.1 MGESACLLRSFSHPSSASREAKEDNPIRALTESISFGRFMSESLAWEKWSTFSHNRYLEEVEQFSKPGSVAQKKAYFEAHYKKRAAMKAAALLEQANAAS NVPEVEAADEALNSSHVNSELPKETNDVIINEQDEGSVDAGVIQSSDANAFYADELKDNLQNAKEEGNEEVREKNVAMENSIQVENVKENENAEDSDIIV AMPEEKIPNKVSCHSNQVAAEEENVTLPSKERQSKSSSQSRASILPKSSAKPPSSARLRAETNDTPNIKKSAGELMNKKRVTPKSIHMSINFASQFQDTS ESSLRVSKFRSATPEIPTKVANAKQIENAQDSDTANKVSCHSTQVAAEEENVALPSNKRQMSSSSKSSSQSRATKLPKSSAKLSSSTRLRAETNATTNSK KSAGGLMDRKGVTQKSIHMSINFSSRLQDTNKSSLRVSKDMSATPEISTKGSVYGVSKLLPSVFRRSQDRRTKSELNKSVSGKITAGGISQMLSSDCSKS SSAKGSKSRPPLISSPFSFRSDERAAKRKEFFEKLGEKNNAKEDTEKKHLQARPKEKAEYDIKKPRQSAVFGGKPRDDLHQGLRSPENSTMKIPLTRPRS PKLGRKSTSNVASSKPVIQRSNHSSTRSITLLPKKNTHENASPNIQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26050			TPX2 (targeting protein for Xk...		Potri.008G180900 [exp]	0	1
AT3G26050			TPX2 (targeting protein for Xk...		Potri.010G053200 [exp]	5.47	0.8925
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Potri.004G069400 [exp]	8.48	0.8268
AT2G23530			Zinc-finger domain of monoamin...		Potri.007G036200 [exp]	8.94	0.8665
AT5G19160		TBL11	TRICHOME BIREFRINGENCE-LIKE 11...		Potri.008G203900 [exp]	12.84	0.8638
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Potri.009G044300 [exp]	13.85	0.8229
AT4G01730			DHHC-type zinc finger family p...		Potri.002G186800 [exp]	14.42	0.8644
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Potri.007G004001 [exp]	15.49	0.8169
AT5G66840			SAP domain-containing protein ...		Potri.003G069700 [exp]	15.49	0.8662
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Potri.010G031800 [exp]	16.49	0.8557
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Potri.003G120400 [exp]	17.20	0.7995

Compare expression of checked genes

Potri.008G180900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.