Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67720 1339 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G37050 877 / 0 Leucine-rich repeat protein kinase family protein (.1.2.3) AT4G29990 469 / 1e-151 Leucine-rich repeat transmembrane protein kinase protein (.1) AT1G51860 466 / 6e-150 Leucine-rich repeat protein kinase family protein (.1) AT1G49100 464 / 3e-149 Leucine-rich repeat protein kinase family protein (.1) AT2G14510 454 / 9e-146 Leucine-rich repeat protein kinase family protein (.1) AT2G14440 453 / 3e-145 Leucine-rich repeat protein kinase family protein (.1) AT1G51805 449 / 1e-143 Leucine-rich repeat protein kinase family protein (.1.2) AT1G51890 449 / 1e-143 Leucine-rich repeat protein kinase family protein (.1.2) AT1G05700 447 / 2e-143 Leucine-rich repeat transmembrane protein kinase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052800 [exp] 1739 / 0 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G084900 [exp] 894 / 0 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.006G132100 [exp] 877 / 0 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.007G004700 [exp] 449 / 6e-143 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.002G242700 [exp] 446 / 7e-142 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G094600 [exp] 404 / 2e-126 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094700 [exp] 397 / 1e-123 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094300 [exp] 395 / 4e-123 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094200 [exp] 298 / 3e-91 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036935 [exp] 1476 / 0 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037051 [exp] 1469 / 0 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015057 [exp] 875 / 0 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10019907 [exp] 875 / 0 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10023166 [exp] 870 / 0 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10025849 [exp] 465 / 1e-149 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10019237 [exp] 429 / 3e-135 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10025926 [exp] 409 / 5e-128 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038172 [exp] 372 / 1e-114 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004275 [exp] 344 / 6e-104 AT2G37050 374 / 3e-115 Leucine-rich repeat protein kinase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF12819 [poplar] [flax] Malectin_like Malectin-like domain
Representative CDS sequence Show only first row Show all	>Potri.008G181200.1 pacid=42807132 polypeptide=Potri.008G181200.1.p locus=Potri.008G181200 ID=Potri.008G181200.1.v4.1 annot-version=v4.1 ATGGCTCTGTATTCTCACTTTCTGGTTCTCTATCTGTTCTTTGTATCTTCTGTTATATGCCAAGTTACAGAATTTATCAGTATAGATTGTGGAGGCACAA GTAATTACACTGATCCAAGAACTGGACTAGCATGGGTTTCAGACAACGGTACAATCATGAAGTATGGAAAATCATCAGAAGCACAGGTTTCAAATGGAAA TACGCAGTATCAAAGACGGCGAGACTTTCCTATAGACAGCAACAAGTACTGTTACACTCTAGGTACCAAAGAGAGAAGGCGGTATCTTGTCCGTGCCACT TTTCAATATGGAAGTTCGGAAAATGAAGATGCCTACCCCAAATTTGATCTCTACTTGGACACAACAAAGTGGTCGACTATGGTAGTATTGGATGCTTCAA GAGTGTATGTGAAGGAAATGATTATCAGGGCTCCTTCAAGTTCAATTGATGTGTGCATATGCTGTGCTACAACTGGTTCTCCCTTCATATCCACTCTAGA ATTGCGACCTCTCAACCTTTCAATGTATGCCACTGATTTTGAGGATAATTTCTTCTTAGAGGTAGCAGCTAGAGTAAATTTTGGTGCTTTAAGCAAGGAT GCCATAAGGTACCCGGATGATCCATATGACAGAATTTGGGGTTCAGATCTCGAGAAAAGGCAAAACTACCTTGTAGGGGTGGCCCCTGGCACAGTTAGAA TCAATACATCGAAGTACGTAGACACTAGGACTAGAGAATACCCTCCAGTTAAAGTAATGCAAACAGCTGTTGTTGGCACTGAAGGAATACTAAGCTATAG GTTGAATCTTGAAGATTTCCCTGCAAATGCTCGAGCTTATGCATATTTTGCCGAAATTGAAGACTTGGGAGCCAATGAGACTCGGAAATTCAAATTACAG CAACCTTTCTTATCTGACTACAGCAATGCAGTGGTAAATATAGCAGAAAATGCCAATGGAAGCTACACTCTTTATGAACCCAGCTACATGAATGTGTCTC TGGATTTTGTTCTTTCATTCTCTTTTGCCAAGACCCGAGATTCTACACTAGGACCACTCTTAAATGCGATTGAGATTAGTAAATACCTAAAGATTGAACC GAAGACTGACAGCAAAGATGTGACTGTTCTCAATGCCCTTCGCTTTCTGTCTGCTGAAAGTGCTTGGGCAAATGAACAAGGCGATCCTTGTGTTCCTGCT CACTGGGAATGGGTGAATTGCTCCTCAACCACACCACCAAGAATCACAAAAATTGCATTGTCAGGAAAGAACCTGAAAGGAGAGATTCCACCTGAGATTA ACAACATGGAGCAATTGACAGAGTTGTGGTTGGATGGTAACTTCCTTACAGGGCCTATCCCTGGTATAAGCAATCTCGTTAATTTGAAAATTGTGCATCT GGAGAACAACAAACTGAATGGTCCATTGCCCAAGTACCTTGGCAGTTTGCCTAAATTACAGGCACTGTACATACAGAACAACTCCTTTAGTGGGGAAATA CCTTCAGAATTTTTAACTGGAAAAGTTATCTTTAATTATGAACATAATCCTGGGCTACACAAAGAGGCAAGAAAAAAGATGCACTTGAAGTTGATAGTTG GAATTTCGATTGGCATACTTGCAGGTCTATTAGTTGTTGTGATAGGAAGTTTACTATTCTTGCGTAATCTTCAAAGAAAGACATCTCATAAAAAAAGTGA AGTCCAAGGTAATTCTTTGCGTGCAAGTACCAAGCCTTCGACTGCGTATTCTGTAGCACGGGGTTGGCATATGATGGATGAAGGAGTTTCATACTATATT CCGCTCCCTGAGCTTGAAGAAGCTACCAAGAATTTTTCCAAGAAAATAGGCAGAGGAAGTTTTGGGACTGTCTACTATGGGCAAATGAAAGACGGAAAAG AAGTGGCAGTTAAGATAATGGCTGACTCGTCCACTCATCTGACGCTGCAGTTTGTGACTGAGGTTGCCCTCTTGTCAAGAATTCATCATAGGAACTTGGT TCCTCTGCTTGGATATTGTGAAGAAGAACATCAGCGTATTCTGGTTTATGAATACATGCACAATGGAACTTTGCGCGATCACATTCATGGTCCTGTCAAC CAGAAGCGCTTGGATTGGCTAGCTCGTTTGCAGATCGCAGAGGATGCAGCAAAAGGACTTGAATACTTGCACACCGGATGCAACCCCAGTATCATCCACC GAGATGTTAAAACAAGCAACATTCTCCTAGACATCAATATGAGAGCAAAAGTGTCAGATTTTGGGCTCTCAAGGCAAGCTGAAGAAGATTTAACCCATGT ATCAAGTGTGGCGCGAGGAACAGTCGGCTACCTGGATCCTGAGTACTATGCAAATCAGCAATTGACTGAAAAAAGTGATGTCTACAGCTTTGGAGTAGTT CTCTTAGAACTGGTATCAGGAAAAAAACCTGTCTCAACAGAAGATTTTGGTTCTGAATTGAACATTGTTCATTGGGCAAGGTCCTTGATTCGTAAAGGAG ATGTGATGAGCATTGTAGATCCTGTTCTAATTGGAAATGCCAAGATTGAGTCCATCTGGAGGATTGCTGAAGTTGCAATCCAATGCGTAGAACAACGAGC ATTTTCTCGGCCAAGGATGCATGAAATAATTTTGGCTATACAAGAAGCTAACAAGATTGAAAAAGGAACTGATGGCAGCCAAAAACAACAATCTGCTAGT TCAAAGGCACAATCTTCCCGGAAAACATTACTAACAAGCTTTCTCGAGATTGAGAGCCCTGACTTATCTAATGGTTGCCTTGTCCCAGCAGCCAGATAG
AA sequence Show only first row Show all	>Potri.008G181200.1 pacid=42807132 polypeptide=Potri.008G181200.1.p locus=Potri.008G181200 ID=Potri.008G181200.1.v4.1 annot-version=v4.1 MALYSHFLVLYLFFVSSVICQVTEFISIDCGGTSNYTDPRTGLAWVSDNGTIMKYGKSSEAQVSNGNTQYQRRRDFPIDSNKYCYTLGTKERRRYLVRAT FQYGSSENEDAYPKFDLYLDTTKWSTMVVLDASRVYVKEMIIRAPSSSIDVCICCATTGSPFISTLELRPLNLSMYATDFEDNFFLEVAARVNFGALSKD AIRYPDDPYDRIWGSDLEKRQNYLVGVAPGTVRINTSKYVDTRTREYPPVKVMQTAVVGTEGILSYRLNLEDFPANARAYAYFAEIEDLGANETRKFKLQ QPFLSDYSNAVVNIAENANGSYTLYEPSYMNVSLDFVLSFSFAKTRDSTLGPLLNAIEISKYLKIEPKTDSKDVTVLNALRFLSAESAWANEQGDPCVPA HWEWVNCSSTTPPRITKIALSGKNLKGEIPPEINNMEQLTELWLDGNFLTGPIPGISNLVNLKIVHLENNKLNGPLPKYLGSLPKLQALYIQNNSFSGEI PSEFLTGKVIFNYEHNPGLHKEARKKMHLKLIVGISIGILAGLLVVVIGSLLFLRNLQRKTSHKKSEVQGNSLRASTKPSTAYSVARGWHMMDEGVSYYI PLPELEEATKNFSKKIGRGSFGTVYYGQMKDGKEVAVKIMADSSTHLTLQFVTEVALLSRIHHRNLVPLLGYCEEEHQRILVYEYMHNGTLRDHIHGPVN QKRLDWLARLQIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYANQQLTEKSDVYSFGVV LLELVSGKKPVSTEDFGSELNIVHWARSLIRKGDVMSIVDPVLIGNAKIESIWRIAEVAIQCVEQRAFSRPRMHEIILAIQEANKIEKGTDGSQKQQSAS SKAQSSRKTLLTSFLEIESPDLSNGCLVPAAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67720			Leucine-rich repeat protein ki...		Potri.008G181200 [exp]	0	1
AT4G03260			Outer arm dynein light chain 1...		Potri.013G150300 [exp]	6.40	0.8715
AT1G17110		UBP15	ubiquitin-specific protease 15...		Potri.001G378900 [exp]	13.11	0.8569
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Potri.008G151500 [exp]	15.58	0.8988	LOX1.8
AT4G27190			NB-ARC domain-containing disea...		Potri.001G432366 [exp]	16.97	0.8617
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Potri.008G183000 [exp]	21.35	0.8986
AT1G03670			ankyrin repeat family protein ...		Potri.013G133800 [exp]	26.49	0.8961
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Potri.010G174500 [exp]	35.49	0.8573
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072100 [exp]	42.49	0.8975
AT2G23610		ATMES3	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G036700 [exp]	46.09	0.8570
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G083500 [exp]	46.90	0.8795

Compare expression of checked genes

Potri.008G181200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.