Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24440 352 / 9e-124 RING/U-box superfamily protein (.1) AT1G13195 338 / 2e-118 RING/U-box superfamily protein (.1.2) AT5G01520 230 / 5e-76 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) AT3G47160 225 / 6e-74 RING/U-box superfamily protein (.1.2) AT5G58787 209 / 1e-67 RING/U-box superfamily protein (.1.2) AT3G48030 44 / 4e-05 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT2G17730 44 / 4e-05 NIP2 NEP-interacting protein 2 (.1.2) AT4G35840 43 / 7e-05 RING/U-box superfamily protein (.1) AT2G20030 43 / 0.0001 RING/U-box superfamily protein (.1) AT1G23980 42 / 0.0002 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052700 [exp] 464 / 3e-168 AT1G24440 349 / 1e-122 RING/U-box superfamily protein (.1) Potri.012G093300 [exp] 353 / 2e-124 AT1G24440 312 / 4e-108 RING/U-box superfamily protein (.1) Potri.015G089800 [exp] 335 / 4e-117 AT1G24440 295 / 3e-101 RING/U-box superfamily protein (.1) Potri.010G053000 [exp] 253 / 8e-85 AT1G13195 235 / 1e-77 RING/U-box superfamily protein (.1.2) Potri.004G041200 [exp] 243 / 8e-81 AT3G47160 313 / 1e-108 RING/U-box superfamily protein (.1.2) Potri.011G050700 [exp] 238 / 7e-79 AT3G47160 311 / 5e-108 RING/U-box superfamily protein (.1.2) Potri.016G115300 [exp] 236 / 4e-78 AT5G01520 339 / 6e-119 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.006G099600 [exp] 230 / 7e-76 AT5G01520 324 / 4e-113 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.001G250800 [exp] 229 / 1e-75 AT3G47160 344 / 4e-121 RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006253 [exp] 402 / 2e-143 AT1G13195 336 / 4e-117 RING/U-box superfamily protein (.1.2) Lus10036937 [exp] 395 / 8e-141 AT1G24440 332 / 5e-116 RING/U-box superfamily protein (.1) Lus10006448 [exp] 347 / 5e-122 AT1G24440 318 / 1e-110 RING/U-box superfamily protein (.1) Lus10011391 [exp] 344 / 8e-121 AT1G24440 319 / 4e-111 RING/U-box superfamily protein (.1) Lus10011390 [exp] 240 / 8e-80 AT3G47160 233 / 3e-77 RING/U-box superfamily protein (.1.2) Lus10006447 [exp] 239 / 3e-79 AT3G47160 233 / 5e-77 RING/U-box superfamily protein (.1.2) Lus10037053 [exp] 235 / 1e-77 AT3G47160 234 / 1e-77 RING/U-box superfamily protein (.1.2) Lus10036934 [exp] 234 / 3e-77 AT3G47160 239 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10005859 [exp] 230 / 6e-76 AT3G47160 372 / 5e-132 RING/U-box superfamily protein (.1.2) Lus10004821 [exp] 228 / 7e-75 AT5G01520 387 / 5e-138 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.008G181300.1 pacid=42806333 polypeptide=Potri.008G181300.1.p locus=Potri.008G181300 ID=Potri.008G181300.1.v4.1 annot-version=v4.1 ATGGAGATGATGCATTATCAGTTGAGCAACTCATCTTACCAAGACTCCCTCAAAGTCTTGGAGGCTGATATCCAGCATGCCAATGCTTTGGCTGCTGCAA TTCCAAGGGGCAAGGATGGAGCGCGTCTGCAGATGAAATTAGTTTACAATCGCTGGGCACCTCTCCTTTTCTTTTTGCTACAACGGATAGATTGTTCATG CATTTGCCTACTCCCTAGATATCTAAATTTCTTTCATGTACTTCTATATAAGGTATATAGCGATGGTAGACCTAGCCTATCTAAGCACGGAAGGAAAGCA ACAATTCGGGAATTCTACGGTGTTATATCACCGTCTCTTCAACGGCTTCATAGTAACTTAGAAGAGTTGGAAGATGTTAAGGGAGATAATTCTGGCATGG AGAGTTTGTGCAAAAATAAGGTGGAAGGAGATAACAAGCTTGCCAATATTGATTTAGAGAGGGAAGATGAATGTGGAATTTGTTTGGAGCCCTGCACCAA AATGGTACTGCCTAATTGCTGTCATGCAATGTGCATCAAATGCTACCGCAACTGGAACACGAGGTCAGAGTCCTGCCCATTTTGCCGTGGCAGCTTAAAG AGAGTTAACTCGGAAGACCTATGGGTTCTCACTTGTAACAATGAAGTTGTTGACACAAAAGCGGTTTCCAAAGAGGATTTGTCGCGCTTCTATCTCTACG TCAATAGCTTGCCAAAAGATTATCACGATTCCCTTTTCTTAATGTATTACGAGTACCTAATATGA
AA sequence Show only first row Show all	>Potri.008G181300.1 pacid=42806333 polypeptide=Potri.008G181300.1.p locus=Potri.008G181300 ID=Potri.008G181300.1.v4.1 annot-version=v4.1 MEMMHYQLSNSSYQDSLKVLEADIQHANALAAAIPRGKDGARLQMKLVYNRWAPLLFFLLQRIDCSCICLLPRYLNFFHVLLYKVYSDGRPSLSKHGRKA TIREFYGVISPSLQRLHSNLEELEDVKGDNSGMESLCKNKVEGDNKLANIDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTRSESCPFCRGSLK RVNSEDLWVLTCNNEVVDTKAVSKEDLSRFYLYVNSLPKDYHDSLFLMYYEYLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24440			RING/U-box superfamily protein...		Potri.008G181300 [exp]	0	1
AT4G14840			unknown protein		Potri.008G153800 [exp]	2.23	0.8232
AT1G24440			RING/U-box superfamily protein...		Potri.010G052700 [exp]	5.00	0.7896
AT4G05070			Wound-responsive family protei...		Potri.011G041700 [exp]	5.65	0.7596
AT3G17940			Galactose mutarotase-like supe...		Potri.017G129300 [exp]	6.92	0.7921
					Potri.018G014550 [exp]	8.48	0.7723
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Potri.006G043800 [exp]	12.12	0.7748
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.003G185050 [exp]	14.42	0.7506
AT5G59080			unknown protein		Potri.009G038300 [exp]	15.87	0.7697
					Potri.013G032900 [exp]	16.24	0.7913
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Potri.013G123500 [exp]	16.91	0.7669

Compare expression of checked genes

Potri.008G181300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.