Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26085 308 / 1e-104 CAAX amino terminal protease family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006251 [exp] 309 / 4e-105 AT3G26085 298 / 4e-101 CAAX amino terminal protease family protein (.1.2.3) Lus10036938 [exp] 323 / 2e-100 AT1G24460 838 / 0.0 TGN-localized SYP41 interacting protein, unknown protein Lus10028751 [exp] 42 / 0.0004 AT5G60750 429 / 4e-151 CAAX amino terminal protease family protein (.1) Lus10017536 [exp] 41 / 0.0008 AT5G60750 422 / 2e-148 CAAX amino terminal protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0472 [poplar] [flax] Peptidase_U PF02517 [poplar] [flax] CPBP CPBP intramembrane metalloprotease
Representative CDS sequence Show only first row Show all	>Potri.008G181400.2 pacid=42806237 polypeptide=Potri.008G181400.2.p locus=Potri.008G181400 ID=Potri.008G181400.2.v4.1 annot-version=v4.1 ATGGCTTTGCTTACTAATACCTCAGCTAATATCTACTCTGTAACCAACCACGTATCATGGTCAAATTCTACCTTCATGGGTGGGAAGTTCACTGCCCTCT ATCTAATTGATTCTTGTCAGTTCTTGCAGTTACCTGCCAAATCACCTAGCGGCGATAAGTTTCGCACAAGGACTTTTGCGAGACGGAAATCAGTGAAAAA ATGGACAAGGGATGAGCGGTCACAAAATGGTATAGCTCTGGAAAGTACTGAGAAGGGTTTAGAAGAAGAGAGAGTAGTGTTATCAGATAAGTCTTCTTTA GAGGATAATTCTGTGGAGCCTGTGCAAAGTACACTCAACAATATCGCTTCAAGAAGTGATGTGCTTCAGGCATGCACTGTCACTTCTGGGTTGATAGCTG CTTTGGGTATATTAATTCGACAGGTGTCTCATGTCGCATCAATGGAAGGACTGCCAATCCTCGACTGCTCTACAGAAGTCTCATTTGGTATTGAGATGTG GCATCTTGAGTTGATTACAGGATTGGTCATACTGATTTCATCATGCAGATACTTGCTACTGAAGACATGGCCAGATTTTGCTGAATCAACAGAAGCAGCC AATCAGCAGGTCCTTACATCATTACAACCTTTGGATTACTTAGTTGTTTCATTCTTGCCGGGAGTTACTGAGGAACTTCTTTTCCGAGGTGCGCTGCTAC CGCTCTTTGGAATGGATTGGAAGAGTGTCCTTCTAGCTGCTACCATATTTGGTGTTCTACATTTGGGAAACGGTCGAAAGTACTCCTTTGCTATCTGGGC AACCTTTGTTGGATTTGTCTATGGCTATGCTACCATTGTATCCTCAAGCTTGGTCGTACCAATGGCTTCTCATGCACTGAACAATCTAGCCGGTGGGCTC CTGTGGCGACACACATCAAAGCCAGCAAAATAG
AA sequence Show only first row Show all	>Potri.008G181400.2 pacid=42806237 polypeptide=Potri.008G181400.2.p locus=Potri.008G181400 ID=Potri.008G181400.2.v4.1 annot-version=v4.1 MALLTNTSANIYSVTNHVSWSNSTFMGGKFTALYLIDSCQFLQLPAKSPSGDKFRTRTFARRKSVKKWTRDERSQNGIALESTEKGLEEERVVLSDKSSL EDNSVEPVQSTLNNIASRSDVLQACTVTSGLIAALGILIRQVSHVASMEGLPILDCSTEVSFGIEMWHLELITGLVILISSCRYLLLKTWPDFAESTEAA NQQVLTSLQPLDYLVVSFLPGVTEELLFRGALLPLFGMDWKSVLLAATIFGVLHLGNGRKYSFAIWATFVGFVYGYATIVSSSLVVPMASHALNNLAGGL LWRHTSKPAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26085			CAAX amino terminal protease f...		Potri.008G181400 [exp]	0	1
AT4G01995			unknown protein		Potri.002G194500 [exp]	1.73	0.9276
AT5G52110		CCB2, HCF208	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.015G138400 [exp]	3.16	0.8721
AT4G21210		ATRP1	PPDK regulatory protein (.1.2)		Potri.004G022900 [exp]	7.00	0.8609
AT5G59400			unknown protein		Potri.009G032300 [exp]	7.93	0.8391
AT5G56850			unknown protein		Potri.006G151100 [exp]	8.48	0.8941
AT3G55040		GSTL2	glutathione transferase lambda...		Potri.008G046800 [exp]	11.74	0.8895
AT2G30170			Protein phosphatase 2C family ...		Potri.001G282500 [exp]	24.00	0.8873
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Potri.014G133400 [exp]	28.91	0.8274	APG3.1
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Potri.013G086800 [exp]	30.98	0.8272
AT5G16810			Protein kinase superfamily pro...		Potri.019G050500 [exp]	32.31	0.8576

Compare expression of checked genes

Potri.008G181400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.