Plant FIBer expression Database

Potri.008G181500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G26090 579 / 0 ATRGS1, RGS1 REGULATOR OF G-PROTEIN SIGNALING 1, G-protein coupled receptors;GTPase activators (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011395
[exp]
627 / 0 AT3G26090 624 / 0.0 REGULATOR OF G-PROTEIN SIGNALING 1, G-protein coupled receptors;GTPase activators (.1)
Lus10006452
[exp]
620 / 0 AT3G26090 627 / 0.0 REGULATOR OF G-PROTEIN SIGNALING 1, G-protein coupled receptors;GTPase activators (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0272 RGS PF00615 RGS Regulator of G protein signaling domain
Representative CDS sequence
>Potri.008G181500.1 pacid=42807491 polypeptide=Potri.008G181500.1.p locus=Potri.008G181500 ID=Potri.008G181500.1.v4.1 annot-version=v4.1
ATGATGAAAGAAGAAGTTAATGGGAGTCGAAGCTGTGCTGTGCAAGGAGGTTGCCCCTCCGATTACATAGCTATTTCCATAGCCATCCTCGCCTTCTTCT
TGCTTCTTTCAAGGTTACTTTTTCCCTTTTTGATCCACAAGATCCCTCGTACTAATGGCAGTGGCTTCTGGATTCCAGTTATTCAAGTGTTTGGCAGCTT
TAACCTTTTGTTATCAATTGTGATGTCTATCAATTTCCTGAAATTTGAAAAGAGTCACTGGTGGCAGTCTTGCTATGTTTGGGCAGTTTGGATTGAAGGT
CCTCTTGGATTTGGTTTGCTACTGAGTTGCCGAATAGCCCAAGCTTTCCAACTGCATCATATATTTGTCAAGAGGCAATTACCACCAATTAGATCTTATT
TTTTTCTTCCTCTGATTCTCTTGCCATGGGTTGCCGGAGCTGCATTCGTCCATGTGAAGAGACCTTTGAATGATCGGTGCCACATGGGGACTCATTGGAT
CGTTCCAGTTGTGTGCCTTCACACAATATATGTTGCTGCTCTGGTTGGATTCACATGGGCAATTCGGCATATAGAGTTCAGGTTTAATGAACTCAAAGAC
TTATGGCAGGGGATACTTGTTTCGTCTTTATCTATTGGGATATGGTTTGCTGCTTATATTTCAAATGAAACTCGTGATGACATCTGGTGGCTCCAAGTTG
CCTCCAGAATTTTGCTTTTGATAACAGCAAGCGTACTGGTTCTGTTTTTCTTCTCTATATCAAGTTCACAGCCTTTGCTCTCACAAATTAGCTTGAGGAA
AAGAGAACCTTTAGAATTTCAAACAATGGGTCAAGCTCTGGGTATACCTGATAGTGGACTGCTATTGCAAATAGATTCTGTTCCGGTCATAGATCCTAAC
GAACCACTCGACAAGCTTCTTCTCAACAAAAGATTCCGCCAGTCTTTTATGGCATTTGCTGACAGCTGCTTGGCGGGGGAGAGCGTGCATTTCTATAATG
AAGTGCATGAACATGATAAAATTCCTGTAGATGACCCTGTAAGAAGGATCTACATGGCACGACATATTATTGAGAAGTATATTGTTGCAGGTGCATCAAT
GGAGGTGAACATATCTTATCGAACACGACAAGAAATACTGACCACCACCAATTTGGCACACCCTGATTTGTTTAATAATGCACTAAATGAACTGATGCAG
CTGATGAAGACGAACTTGGTAAAGGATTACTGGTCATCCATGTTTTTCATCAAGTTCAAAGAGGCCAATATGAGATTCAATGGCCATGAGCAGGAATCGA
TGGCAGGGTGGAACTTCTCTCCTCGATTGAGTTCAGTGCGTGGTGCTGATGATCCATTCCACCAAGAACATGTTTTAAAGGGCTTCGGCTGTGATAATCG
TGACTTGGACACACAATGA
AA sequence
>Potri.008G181500.1 pacid=42807491 polypeptide=Potri.008G181500.1.p locus=Potri.008G181500 ID=Potri.008G181500.1.v4.1 annot-version=v4.1
MMKEEVNGSRSCAVQGGCPSDYIAISIAILAFFLLLSRLLFPFLIHKIPRTNGSGFWIPVIQVFGSFNLLLSIVMSINFLKFEKSHWWQSCYVWAVWIEG
PLGFGLLLSCRIAQAFQLHHIFVKRQLPPIRSYFFLPLILLPWVAGAAFVHVKRPLNDRCHMGTHWIVPVVCLHTIYVAALVGFTWAIRHIEFRFNELKD
LWQGILVSSLSIGIWFAAYISNETRDDIWWLQVASRILLLITASVLVLFFFSISSSQPLLSQISLRKREPLEFQTMGQALGIPDSGLLLQIDSVPVIDPN
EPLDKLLLNKRFRQSFMAFADSCLAGESVHFYNEVHEHDKIPVDDPVRRIYMARHIIEKYIVAGASMEVNISYRTRQEILTTTNLAHPDLFNNALNELMQ
LMKTNLVKDYWSSMFFIKFKEANMRFNGHEQESMAGWNFSPRLSSVRGADDPFHQEHVLKGFGCDNRDLDTQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G26090 ATRGS1, RGS1 REGULATOR OF G-PROTEIN SIGNALI... Potri.008G181500
[exp]
0 1
AT3G03560 unknown protein Potri.013G073400
[exp]
4.24 0.8291
AT1G30910 Molybdenum cofactor sulfurase ... Potri.003G154900
[exp]
5.56 0.8312
AT1G48950 C3HC zinc finger-like (.1) Potri.015G052400
[exp]
5.91 0.8138
AT1G07870 Protein kinase superfamily pro... Potri.009G026500
[exp]
7.87 0.7639
AT1G29220 transcriptional regulator fami... Potri.011G068100
[exp]
8.71 0.7264
AT4G29540 AtLpxA bacterial transferase hexapept... Potri.006G150200
[exp]
8.77 0.8000
AT3G14205 Phosphoinositide phosphatase f... Potri.001G163900
[exp]
9.53 0.7935
AT1G04950 EMB2781, ATTAF6... TBP-associated factor 6, EMBRY... Potri.001G359400
[exp]
11.48 0.8176
AT3G22400 ATLOX5, LOX5 Arabidopsis thaliana lipoxygen... Potri.010G089500
[exp]
11.91 0.7286 LOX1.7
AT5G05800 unknown protein Potri.015G137800
[exp]
12.72 0.8047

Potri.008G181500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.