Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67730 431 / 6e-153 ATKCR1, YBR159, KCR1 beta-ketoacyl reductase 1 (.1) AT1G24470 306 / 8e-104 ATKCR2, KCR2 beta-ketoacyl reductase 2 (.1) AT5G10050 82 / 7e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 76 / 1e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G47350 73 / 1e-14 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT3G47360 72 / 4e-14 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT1G49670 72 / 7e-14 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT3G03330 69 / 4e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 67 / 6e-13 SAG13 senescence-associated gene 13 (.1.2.3) AT5G06060 63 / 3e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052300 [exp] 558 / 0 AT1G67730 449 / 7e-160 beta-ketoacyl reductase 1 (.1) Potri.008G181600 [exp] 366 / 4e-127 AT1G24470 331 / 2e-113 beta-ketoacyl reductase 2 (.1) Potri.010G052500 [exp] 355 / 9e-123 AT1G24470 353 / 2e-122 beta-ketoacyl reductase 2 (.1) Potri.010G052400 [exp] 315 / 3e-107 AT1G67730 320 / 3e-109 beta-ketoacyl reductase 1 (.1) Potri.009G103000 [exp] 74 / 2e-14 AT1G49670 943 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Potri.013G084100 [exp] 72 / 4e-14 AT3G03330 446 / 2e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G086600 [exp] 72 / 6e-14 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 68 / 5e-13 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G178700 [exp] 69 / 7e-13 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006248 [exp] 480 / 4e-172 AT1G67730 451 / 1e-160 beta-ketoacyl reductase 1 (.1) Lus10036940 [exp] 479 / 9e-172 AT1G67730 449 / 4e-160 beta-ketoacyl reductase 1 (.1) Lus10011396 [exp] 318 / 2e-108 AT1G24470 357 / 7e-124 beta-ketoacyl reductase 2 (.1) Lus10006249 [exp] 208 / 1e-66 AT1G67730 212 / 2e-68 beta-ketoacyl reductase 1 (.1) Lus10019683 [exp] 79 / 1e-16 AT5G10050 315 / 3e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016430 [exp] 76 / 1e-15 AT5G10050 323 / 8e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10015821 [exp] 75 / 9e-15 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016429 [exp] 71 / 1e-13 AT5G10050 349 / 1e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 71 / 2e-13 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026851 [exp] 70 / 2e-13 AT3G03330 439 / 7e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.008G181700.3 pacid=42807586 polypeptide=Potri.008G181700.3.p locus=Potri.008G181700 ID=Potri.008G181700.3.v4.1 annot-version=v4.1 ATGGGTCTCCGTTTCATTGACCAGCTCAAAGATCAGCCTTTCTGGCTTCTTCTGCTCTTCACTTTGGGTTCTCTTTCACTTCTGAAATTCCTTTCCGCTA CTCTCAAATGGGTCTACGTTAGTTTCCTCAGACCTGCCAAGAATCTCAAGAAATATGGGTCATGGGCTCTCGTTACTGGGCCCACTGACGGTATTGGCAA GGGATTCGCTTTCCAATTGGCTCGAAAGGGTCTCAATCTAGTCTTGGTGGGCAGGAATCCTGATAAACTCAAAGACGTGTCACGTTCTATTCAATCCAGA TACAGTAATGTTCAAATCAAGAACGTTGTTGTTGATTTCAGTGGCGATATTGACGAGGGTGTTCAAAAGATCAAGGAGACTATTGAAGGATTGGATGTTG GTGTCTTGATTAATAATGTTGGGGTTTCTTATCCTTGTGCGAGGTTCTTTCATGAGGTTGATGAGGGGTTGTTGAAGAATTTGATTAAAGTGAACGTGGA AGGCACTACCAAAGTTACGCAAGCTGTTTTGCATGGGATGTTGAAGAAGAAGAAAGGTGCTATTGTTAATATTGGTTCTGGTGCTGCCATTGTTATTCCT TCTGATCCTCTTTATGCTGTTTATGCTGCTACTAAAGCGTACATTGATCAATTCTCAAGATGCCTTTATGTTGAATACAAGAAAAGTGGGATTGATGTGC AGTGTCAGGTTCCGCTTTACGTGGCAACAAAGATGGCATCAATAAGGAGATCTTCCTTTTGGGTTCCATCATCAGATGGTTATGCCCGGGCAGGTCTGCG TGCTATAGGCTATGAACCTCGCTGCACACCTTACTGGCCCCATTCCCTTCTCTGGGGTTTGATACAATTGTTGCCAGAATCAATTGTTGATTTCTGGAGA CTAAGTTTTTGCCTTGCGATTCGAAAGAAGGGACACCTTAAAGATTCCAGGAAGATGGAATGA
AA sequence Show only first row Show all	>Potri.008G181700.3 pacid=42807586 polypeptide=Potri.008G181700.3.p locus=Potri.008G181700 ID=Potri.008G181700.3.v4.1 annot-version=v4.1 MGLRFIDQLKDQPFWLLLLFTLGSLSLLKFLSATLKWVYVSFLRPAKNLKKYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVGRNPDKLKDVSRSIQSR YSNVQIKNVVVDFSGDIDEGVQKIKETIEGLDVGVLINNVGVSYPCARFFHEVDEGLLKNLIKVNVEGTTKVTQAVLHGMLKKKKGAIVNIGSGAAIVIP SDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIRRSSFWVPSSDGYARAGLRAIGYEPRCTPYWPHSLLWGLIQLLPESIVDFWR LSFCLAIRKKGHLKDSRKME

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Potri.008G181700 [exp]	0	1
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Potri.012G109600 [exp]	2.82	0.9211
AT4G21380		ARK3	receptor kinase 3 (.1)		Potri.011G035600 [exp]	4.00	0.8973
AT3G57220			Glycosyl transferase family 4 ...		Potri.006G045700 [exp]	6.00	0.9123
AT1G28240			Protein of unknown function (D...		Potri.004G044100 [exp]	6.48	0.9205
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.014G147000 [exp]	7.48	0.9108	Pt-RIC2.1
AT3G54880			unknown protein		Potri.010G227800 [exp]	8.36	0.9055
AT4G34040			RING/U-box superfamily protein...		Potri.009G100100 [exp]	14.35	0.8288
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Potri.016G119100 [exp]	15.87	0.8992
AT4G17920			RING/U-box superfamily protein...		Potri.001G140900 [exp]	16.24	0.8934
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Potri.012G130500 [exp]	16.97	0.8772	Pt-ATKEA5.1

Compare expression of checked genes

Potri.008G181700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.