Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24490 502 / 3e-175 ALB4, ARTEMIS ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2) AT2G28800 442 / 4e-152 ABL3, ALB3 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4) AT2G46470 45 / 9e-05 OXA1L inner membrane protein OXA1-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G051900 [exp] 801 / 0 AT1G24490 501 / 3e-174 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2) Potri.001G237800 [exp] 421 / 8e-144 AT2G28800 566 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4) Potri.009G029100 [exp] 405 / 1e-137 AT2G28800 545 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006454 [exp] 521 / 0 AT1G24490 516 / 0.0 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2) Lus10040841 [exp] 408 / 2e-138 AT2G28800 586 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4) Lus10016570 [exp] 389 / 3e-131 AT2G28800 557 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4) Lus10011398 [exp] 362 / 1e-120 AT1G24490 363 / 4e-121 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0376 [poplar] [flax] Oxa1 PF02096 [poplar] [flax] 60KD_IMP 60Kd inner membrane protein
Representative CDS sequence Show only first row Show all	>Potri.008G182000.1 pacid=42806056 polypeptide=Potri.008G182000.1.p locus=Potri.008G182000 ID=Potri.008G182000.1.v4.1 annot-version=v4.1 ATGGCCTCTTCTCTTTCCTGTACAACACCAAGCCTAATCCCTCTCTCCCTCCCTTTTATAGACCGAACCAAAACCTCTACCTCTCTCCCCCCCATCCACC CGCCTCACCGTCCCAAACCATTAATTCCTCGCGGTTCTCTCTGCGTAGCCCGGTTCGGTTTCAGACCGGGTCTCTTTCCTGACCCGGATAACGCGGAGGC TGTAATCAAGAACTTGTTTGGTAGAGCAGAGAGTATTATTTACACAATTGCCGATGCTGCCGTCTCTAATCCCGAACAGGTCGTCGATAGTAGCACCAAA CAGAACAGTGATTGGCTTTCTGGTATTACTTCCTGTCTCGAGAGTACTTTAAAGGTCTTGAAAGATGGGTTATCTGCTTTGCATGTACCGTATGCTTATG GTTTTGCTATTATACTCTTGACTGTTCTTGTCAAGGCTGCTACATTTCCTTTGAGTAAGAAACAGGTGGAATCTGCTATGGCTATGCGATCTTTGCAACC GCAAATTAAGGCTGTTCAACAACTCTATGCTGGTGATCAGGAGAGGATTCAACTTGAGACTGCTCGGTTGTATAAGCTAGCCGGCATAAACCCACTAGCA GGATGTCTCCCTACACTTGCCACAATTCCAGTGTGGATTGGACTCTATAGAGCCCTTTCAAATGTAGCAAATGAGGGACTCCTCACAGAAGGCTTCTTTT GGATACCCTCTCTGGCTGGTCCAACTACAATTGCTGAACGTCAAAATGGCAGCGGAATCTCTTGGCTTTTCCCTTTTGTAGATGGACAGCCACCCCTTGG ATGGTCAGATACTGTGGCATATCTTGTTTTGCCTGCCATGTTGGTTGTCTTGCAATACATGTCCGTCCAAATTATGCAATCATCACAGAGCGATGATCCA AATGTGAAGAATTCTCAAGCAATAATGAAGTTCCTTCCATTAATGATTGGTTACTTTTCTCTTTCAGTTCCTTCTGGTCTAAGCCTTTATTGGCTCACAA ATAACATATTAAGCACAACACAACAGGTGTGGCTTCAAAAGTTAGGGGGTGCAAAAAATCCTGTGACGAAGTTCAGTAATGATATTGTTAAAGAGGACCA ACTGCAGGTTCAGAAACCTATCTCTGAATTAAATTCCATACAAACTAAGACCAGGCAAGAAGAGAAGTTGACGCCAGAAGGGTCGCGTCCTGGTGAAAGA TTCAAGCAATTAAAGGAACAAGAGGCAAGGAGAAGGCAACAAAGAGAAGAAGAGGAGAGGACAGCTGAAGAGGCTGCAGGTAGAGGAAGTCAAATGGAAA ATAATGAGCACGACAGCAGTTCATTTATCAGAGGAAATGGAAACAGTCCAGTTGGTGCTGCTGTAATTGATGACGCATCTACAGCAGCTATTCATGATTC CTCTGCCCTTAAGGTTGTAAATGGTGATCTATCTGGCCAGGACCAGAAGCAAGATGGGGAAACAAATTCCATAGTAGAAAAAAGTGAAGTTTCCGCTCCT ACCGAGGATTATCAAGCCAAAAGAGAGTGA
AA sequence Show only first row Show all	>Potri.008G182000.1 pacid=42806056 polypeptide=Potri.008G182000.1.p locus=Potri.008G182000 ID=Potri.008G182000.1.v4.1 annot-version=v4.1 MASSLSCTTPSLIPLSLPFIDRTKTSTSLPPIHPPHRPKPLIPRGSLCVARFGFRPGLFPDPDNAEAVIKNLFGRAESIIYTIADAAVSNPEQVVDSSTK QNSDWLSGITSCLESTLKVLKDGLSALHVPYAYGFAIILLTVLVKAATFPLSKKQVESAMAMRSLQPQIKAVQQLYAGDQERIQLETARLYKLAGINPLA GCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTTIAERQNGSGISWLFPFVDGQPPLGWSDTVAYLVLPAMLVVLQYMSVQIMQSSQSDDP NVKNSQAIMKFLPLMIGYFSLSVPSGLSLYWLTNNILSTTQQVWLQKLGGAKNPVTKFSNDIVKEDQLQVQKPISELNSIQTKTRQEEKLTPEGSRPGER FKQLKEQEARRRQQREEEERTAEEAAGRGSQMENNEHDSSSFIRGNGNSPVGAAVIDDASTAAIHDSSALKVVNGDLSGQDQKQDGETNSIVEKSEVSAP TEDYQAKRE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Potri.008G182000 [exp]	0	1
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Potri.010G163000 [exp]	2.44	0.9208	Pt-WRKY3.2
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Potri.013G148400 [exp]	3.16	0.9334
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.007G003100 [exp]	3.46	0.9276
AT5G18130			unknown protein		Potri.013G057200 [exp]	7.93	0.9199
AT1G77920	bZIP		bZIP transcription factor fami...		Potri.002G090700 [exp]	8.48	0.8839	TGA3.1
AT1G11340			S-locus lectin protein kinase ...		Potri.011G035800 [exp]	9.79	0.9180
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.003G219900 [exp]	10.39	0.8903
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Potri.015G017100 [exp]	10.48	0.8846
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Potri.002G057400 [exp]	10.95	0.9083	PDS1.2
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.003G119600 [exp]	11.18	0.9216

Compare expression of checked genes

Potri.008G182000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.