Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67750 671 / 0 Pectate lyase family protein (.1) AT5G63180 659 / 0 Pectin lyase-like superfamily protein (.1) AT4G24780 634 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G27400 598 / 0 Pectin lyase-like superfamily protein (.1) AT4G13710 586 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G24670 565 / 0 Pectin lyase-like superfamily protein (.1) AT3G07010 560 / 0 Pectin lyase-like superfamily protein (.1) AT1G04680 559 / 0 Pectin lyase-like superfamily protein (.1) AT5G48900 546 / 0 Pectin lyase-like superfamily protein (.1) AT4G13210 544 / 0 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G087800 [exp] 692 / 0 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G051800 [exp] 684 / 0 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.012G091500 [exp] 682 / 0 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G339500 [exp] 634 / 0 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.002G238800 [exp] 579 / 0 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G052300 [exp] 575 / 0 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.014G178100 [exp] 571 / 0 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G175900 [exp] 568 / 0 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.011G093400 [exp] 488 / 6e-173 AT5G63180 509 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036946 [exp] 636 / 0 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10033037 [exp] 630 / 0 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10006456 [exp] 629 / 0 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10011400 [exp] 627 / 0 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10014887 [exp] 602 / 0 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022310 [exp] 600 / 0 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023679 [exp] 587 / 0 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10022817 [exp] 583 / 0 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 582 / 0 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011885 [exp] 579 / 0 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00544 [poplar] [flax] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Potri.008G182200.1 pacid=42806922 polypeptide=Potri.008G182200.1.p locus=Potri.008G182200 ID=Potri.008G182200.1.v4.1 annot-version=v4.1 ATGGCAATCCCACTCTCTCTTTCGATCCTCCTGCTTATTCTAGCTCCAAATTTTATTTCCTGTTCGCCAGTTCAAGATCCTGAATTGGTAGTGGAGGAAG TACACAGGAGCATCAACGCCTCTAGAAGAAAATTGGGTTTCCTTTCTTGTGGAACCGGCAATCCAATAGACGATTGCTGGAGGTGTGACCCCAAATGGGA GAAGAATCGGCAGAGATTAGCAGATTGTGCAATTGGGTTCGGTAAGCATGCGATCGGTGGCAGGGATGGTAAGATATATGTAGTGACAGACCCCGGGAAT GATGACCCTGTGAATCCCAAGCCAGGCACTCTTAGGTATGCTGTTATACAAGAAGAGCCTTTATGGATCATTTTCGCTCGAGACATGGTGATCAAGCTTA AGGAAGAGCTGATCATGAACTCTTTCAAGACGATCGATGGGAGAGGAGCCAGTGTGCACATTGCTGGTGGTCCATGCATCACTGTACAGTATGTGACCAA CATTATAATTCACGGTATAAATATTCATGATTGTAAGCAAGGAGGGAATGCTTATGTGAGGGATTCCCCAGGTCATTATGGATGGAGGACTATATCGGAC GGTGATGGAGTGTCTATATTCGGAGGCAGCCATGTGTGGGTGGATCATTGCTCTTTATCCAATTGCAATGATGGGTTGATTGATGCGATTCATGGATCCA CAGCCATAACAATCTCAAACAATTACTTGACCCATCACAACAAGGTCATGCTCTTGGGCCATAGTGATAGCTATAAACAAGACAAGAACATGCAAGTCAC CATTGCCTTCAACCACTTTGGAGAAGGGCTTGTGCAGAGAATGCCAAGGTGTAGACATGGATATTTCCACGTGGTAAACAACGACTACTCACATTGGAAA ATGTACGCAATTGGAGGCAGTGCCGATCCTACAATTAACAGCCAAGGCAATAGGTTTCTTGCTCCCAATGACAGATTTAATAAAGAGGTAACTAAACATG AGGATGCACCACAAAGTGAATGGAAGGGTTGGAACTGGAGGTCTGAAGGGGATTTGCTGTTAAACGGGGCATTCTTCACAGCATCTGGAGCTGGAGCTTC CTCTAGTTACGCCAAGGCATCCAGCTTAGGTGCAAGACCATCTTCCTTGGTTAGCTCCATCACAGCAGGAGCAGGTTCACTTGCTTGCAAGAAGGGTTCC CGTTGCTGA
AA sequence Show only first row Show all	>Potri.008G182200.1 pacid=42806922 polypeptide=Potri.008G182200.1.p locus=Potri.008G182200 ID=Potri.008G182200.1.v4.1 annot-version=v4.1 MAIPLSLSILLLILAPNFISCSPVQDPELVVEEVHRSINASRRKLGFLSCGTGNPIDDCWRCDPKWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDPGN DDPVNPKPGTLRYAVIQEEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKQGGNAYVRDSPGHYGWRTISD GDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYLTHHNKVMLLGHSDSYKQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYSHWK MYAIGGSADPTINSQGNRFLAPNDRFNKEVTKHEDAPQSEWKGWNWRSEGDLLLNGAFFTASGAGASSSYAKASSLGARPSSLVSSITAGAGSLACKKGS RC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67750			Pectate lyase family protein (...		Potri.008G182200 [exp]	0	1
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Potri.006G086100 [exp]	1.73	0.8942	EXPA3.1,PtEXPA16
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Potri.008G146100 [exp]	5.83	0.8373
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G125200 [exp]	10.48	0.7367
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Potri.011G050800 [exp]	10.72	0.8079
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Potri.003G139600 [exp]	11.00	0.7694
AT4G23820			Pectin lyase-like superfamily ...		Potri.003G139100 [exp]	12.32	0.8157
AT3G08030			Protein of unknown function, D...		Potri.001G263900 [exp]	13.85	0.8051
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.006G228200 [exp]	14.17	0.8161
AT3G18050			unknown protein		Potri.015G040900 [exp]	16.49	0.7939
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.003G087600 [exp]	16.61	0.7659

Compare expression of checked genes

Potri.008G182200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.