Plant FIBer expression Database

Potri.008G182400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G182400.1 pacid=42807655 polypeptide=Potri.008G182400.1.p locus=Potri.008G182400 ID=Potri.008G182400.1.v4.1 annot-version=v4.1
ATGGCAAGCAAAGTGATTGTTCTTGCTCTTGTCTTTGTTGCCATTGTTGGGTTGGCATCAGCAGCAGGACCTGCTCCTTCCACAACTGCCCTGCCAGCAG
AAGCACCTTTGAGCGATGATTTTATCGGTACTGATGATGCTGCTGCAGCTGGTGCACCCTCTGGTGGTGATGCCGTTGTTCCAGGACCAATGGGAAGTGT
TGAAGCAGCTGGGGGACCTTCTGGATCGCCCAAAAGTGATTCTGCTGCCCTCAAGTTCTCTGCCATTACAGGAGTTGCCGCTGTTGCTGGCTACCTCTTC
TTCTAA
AA sequence
>Potri.008G182400.1 pacid=42807655 polypeptide=Potri.008G182400.1.p locus=Potri.008G182400 ID=Potri.008G182400.1.v4.1 annot-version=v4.1
MASKVIVLALVFVAIVGLASAAGPAPSTTALPAEAPLSDDFIGTDDAAAAGAPSGGDAVVPGPMGSVEAAGGPSGSPKSDSAALKFSAITGVAAVAGYLF
F

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G24520 BCP1 homolog of Brassica campestris... Potri.008G182400
[exp]
0 1
AT1G24520 BCP1 homolog of Brassica campestris... Potri.012G095900
[exp]
3.16 0.7609
AT5G49360 ATBXL1, BXL1 beta-xylosidase 1 (.1) Potri.008G108100
[exp]
15.19 0.7594 Pt-BXL1.1
AT1G51510 Y14 RNA-binding (RRM/RBD/RNP motif... Potri.006G048300
[exp]
36.22 0.7500
AT1G48430 Dihydroxyacetone kinase (.1) Potri.012G041100
[exp]
54.02 0.6827
AT4G18650 transcription factor-related (... Potri.004G058200
[exp]
66.40 0.6971
AT2G16920 UBC23 ,PFU2 PHO2 FAMILY UBIQUITIN CONJUGAT... Potri.013G108500
[exp]
71.81 0.7315
AT1G05020 ENTH/ANTH/VHS superfamily prot... Potri.002G224500
[exp]
98.83 0.6842
AT5G64570 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XY... Potri.001G206800
[exp]
105.85 0.7205 XYL4.2
AT3G59510 Leucine-rich repeat (LRR) fami... Potri.017G028600
[exp]
132.32 0.6752
AT5G09590 HSC70-5, mtHSC7... HEAT SHOCK COGNATE, mitochondr... Potri.015G078000
[exp]
139.82 0.6986

Potri.008G182400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.