Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13190 224 / 4e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G55670 111 / 2e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G08000 54 / 3e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G21660 52 / 2e-07 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT5G04600 52 / 3e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G39260 49 / 3e-07 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT5G51300 49 / 8e-06 splicing factor-related (.1.2.3) AT5G44200 48 / 8e-06 ATCBP20, CBP20 CAP-binding protein 20 (.1.2) AT3G23830 46 / 1e-05 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT2G43370 47 / 3e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G051600 [exp] 529 / 0 AT1G13190 198 / 2e-55 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G208500 [exp] 50 / 4e-07 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G155300 [exp] 50 / 5e-07 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.001G207100 [exp] 51 / 6e-07 AT3G26420 175 / 7e-55 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Potri.009G116400 [exp] 49 / 1e-06 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.010G227500 [exp] 49 / 4e-06 AT3G10400 223 / 7e-73 U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) Potri.009G160300 [exp] 45 / 1e-05 AT2G27330 98 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G014600 [exp] 47 / 2e-05 AT5G44200 331 / 2e-115 CAP-binding protein 20 (.1.2) Potri.004G017200 [exp] 46 / 7e-05 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019147 [exp] 364 / 2e-117 AT1G13190 418 / 3e-139 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10038759 [exp] 348 / 3e-112 AT1G13190 378 / 1e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10039103 [exp] 354 / 8e-112 AT1G13190 424 / 2e-139 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10038757 [exp] 251 / 2e-79 AT5G55670 148 / 4e-41 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038758 [exp] 173 / 5e-51 AT5G55670 75 / 2e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10040454 [exp] 52 / 4e-07 AT2G21660 148 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10023569 [exp] 49 / 1e-06 AT2G21660 147 / 8e-46 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10042321 [exp] 49 / 2e-06 AT2G21660 121 / 2e-36 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10042320 [exp] 49 / 2e-06 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10026344 [exp] 49 / 2e-06 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.008G182500.2 pacid=42805875 polypeptide=Potri.008G182500.2.p locus=Potri.008G182500 ID=Potri.008G182500.2.v4.1 annot-version=v4.1 ATGGATTACGAAGAAGAGGAGAAGATGCAATATCAGGGAAGTGGTGCCATTCCTGCGCTTGCAGAGGAAGAGATGGGAGAAGATGATGAGTATGACGATC TATACAATGATGTCAATGTTGGGGAGAATTTCTTGCAGATGCATGGTTCGGAAGCGCCAGCCCCACCTGCTACAGCGGGGAATGGAGGATTCCAAACTCG AAATGCTCATGAATCAAGAGTTGAAACTGGGGGTTCACAAGCGCTTGCTATCACTGGGGGTGGGCCTGCAGTTGAAGGGATATATTCTAATGCTAAGGCT CATTTTCCAGAGCAGAAGCAGGTGGCAGTTGCTGTTGAAGCACAGGATGTAGGGCCTGTTGATGGATCTTCTGTTGCTCAGAAAGGGAGGGTTATAGAGA TGAGTCATGATGTTCAAGTGCGAAACATGGGATTTCAGAAATCAACACCAGTGCCCCCAGGTATCGGGGTTGATCCTTCTGATATGAGTAGAAAAAATGC TAACGAGCCTGAACCTTTGCCAATTACTGGCAGTGCAGGTCCTCGAGGTGCTCCACAAATGCAAGTTAATCAAATGCATATGAGTGCAGATGTTAATCGC CCTGTGGTTAATGAAAATCAGGTCCGGCCACCTGTAGAGAATGGTTCTACCACGCTTTATGTTGGAGAATTACATTGGTGGACCACTGATGCAGAGCTTG AAAGTTTTGCATCTCAATTTGGAAGGGTCAAAGAGATTAAATTCTTTGATGAGAGGGCTAGTGGTAAGTCTAAAGGCTATTGCCAAGTTGACTTCTATGA AGCAGCTGCTGCAGCAGCATGCAAAGAGGGAATGAATGGTCATGTTTTCAATGGACGACCTTGTGTTGTGGCTTTTGCTTCTCCACAAACACTAAAGCAG ATGGGGGCTTCTTACATGAACAAAACCCAGGGTCAGCCTCAGACTCAGTCTCAAGGAAGGGGGTCTATGAATGATGGTGCGGGAAGAGGTGGTAATGCGA ACTTTCAAAGTGGAGATGGAGGAAGGAACTATGGAAGAGGTGCTTGGGGAAGGGGTGGGCAGGGAATTCTCAATCGAGGACCTGGGGGTGGACCAATGAG GGGAAGAGGTGCCATGGGTCCCAAAAACATGGCTGGGAATGTTGCTGGAGTTGGAAGCGGTGCCAATGGTGGAGGGTATGGACAAGGCCTTGCAGGTCCT GCATTTGGTGGGCCTGCCGGTGGAATGATGCCTCCCCAAGGTATGATGGGTGCTGGATTTGATCCACTATACATGGGACGAGGGGGTGGTTATGGGGGTT TTGCTGGTCCTGGTTTTCCTGGCATGCTTCCTTCATTTCCTGCTGTTAATTCAATGGGACTTGCTGGGGTGGCTCCACATGTCAACCCAGCTTTCTTTGC CCGAGGAATGGCACCTAATGGGATGGGAATGATGGTTTCCTCTGGAATGGATGGACCGAATCCAGGAATGTGGTCTGACACAAGCATGGGAGGATGGGGA GAAGAGCATGGTCGAAGGACAAGGGAGTCAAGTTATGATGGCGATGAGGGTGCTTCTGAATATGGATATGGAGAGGGGAACCATGAGAAGGGAGCTCGGT CAAGCGGTGCCTCTAGAGAAAAGGAACGGGGTTCTGAGCGTGACTGGTCAGGTAATTCTGATAGGCGTCACCGTGATGAGAGGGAACAAGACTGGGACAG GCCAGAAAGGGAGCACAGGTACAAGGAAGAGAAAGATAGTTACCGTGGCCATCGGCAAAGGGAGCGTGACTCGGGTTATGAGGATGATCGGGATAGAGGG CACTCTTCTTCAAGAGCTCGGAGCAGATCCCGTGCGGCTCCAGAAGAAGATTACAGGTCTCGAACAAGGGATGTAGACTATGGCAAGAGGAGACGCCTAC CATCAGAGTGA
AA sequence Show only first row Show all	>Potri.008G182500.2 pacid=42805875 polypeptide=Potri.008G182500.2.p locus=Potri.008G182500 ID=Potri.008G182500.2.v4.1 annot-version=v4.1 MDYEEEEKMQYQGSGAIPALAEEEMGEDDEYDDLYNDVNVGENFLQMHGSEAPAPPATAGNGGFQTRNAHESRVETGGSQALAITGGGPAVEGIYSNAKA HFPEQKQVAVAVEAQDVGPVDGSSVAQKGRVIEMSHDVQVRNMGFQKSTPVPPGIGVDPSDMSRKNANEPEPLPITGSAGPRGAPQMQVNQMHMSADVNR PVVNENQVRPPVENGSTTLYVGELHWWTTDAELESFASQFGRVKEIKFFDERASGKSKGYCQVDFYEAAAAAACKEGMNGHVFNGRPCVVAFASPQTLKQ MGASYMNKTQGQPQTQSQGRGSMNDGAGRGGNANFQSGDGGRNYGRGAWGRGGQGILNRGPGGGPMRGRGAMGPKNMAGNVAGVGSGANGGGYGQGLAGP AFGGPAGGMMPPQGMMGAGFDPLYMGRGGGYGGFAGPGFPGMLPSFPAVNSMGLAGVAPHVNPAFFARGMAPNGMGMMVSSGMDGPNPGMWSDTSMGGWG EEHGRRTRESSYDGDEGASEYGYGEGNHEKGARSSGASREKERGSERDWSGNSDRRHRDEREQDWDRPEREHRYKEEKDSYRGHRQRERDSGYEDDRDRG HSSSRARSRSRAAPEEDYRSRTRDVDYGKRRRLPSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Potri.008G182500 [exp]	0	1
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Potri.017G072100 [exp]	2.00	0.8503
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Potri.010G051600 [exp]	2.44	0.8485
AT1G78100		AUF1	auxin up-regulated f-box prote...		Potri.002G094600 [exp]	2.82	0.8378
AT3G60850			unknown protein		Potri.014G070200 [exp]	3.46	0.8529
AT3G13670			Protein kinase family protein ...		Potri.001G009700 [exp]	8.48	0.7953
AT5G58020			unknown protein		Potri.006G186900 [exp]	9.48	0.7980
AT1G09320			agenet domain-containing prote...		Potri.013G006900 [exp]	11.48	0.7719
AT2G01060	GARP		myb-like HTH transcriptional r...		Potri.016G001100 [exp]	12.36	0.7812
AT5G61150		VIP4	VERNALIZATION INDEPENDENCE 4, ...		Potri.012G065600 [exp]	12.96	0.8107
AT3G04470			Ankyrin repeat family protein ...		Potri.013G047500 [exp]	13.85	0.7824

Compare expression of checked genes

Potri.008G182500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.