Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13180 771 / 0 ATARP3, DIS1 DISTORTED TRICHOMES 1, ARABIDOPSIS THALIANA ACTIN-RELATED PROTEIN 3, ACTIN-RELATED PROTEIN 3, Actin-like ATPase superfamily protein (.1) AT2G42100 201 / 1e-60 Actin-like ATPase superfamily protein (.1) AT3G53750 197 / 7e-59 ACT3 actin 3 (.1) AT2G37620 197 / 7e-59 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT5G59370 196 / 1e-58 ACT4 actin 4 (.1.2) AT3G46520 196 / 2e-58 ACT12 actin-12 (.1) AT5G09810 196 / 2e-58 ACT2/7, ACT7 actin 7 (.1) AT3G12110 195 / 2e-58 ACT11 actin-11 (.1) AT2G42090 192 / 3e-57 ACT9 actin 9 (.1) AT3G18780 190 / 3e-56 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G051500 [exp] 820 / 0 AT1G13180 811 / 0.0 DISTORTED TRICHOMES 1, ARABIDOPSIS THALIANA ACTIN-RELATED PROTEIN 3, ACTIN-RELATED PROTEIN 3, Actin-like ATPase superfamily protein (.1) Potri.019G010400 [exp] 195 / 3e-58 AT5G09810 774 / 0.0 actin 7 (.1) Potri.001G309500 [exp] 195 / 3e-58 AT5G09810 775 / 0.0 actin 7 (.1) Potri.008G055500 [exp] 194 / 6e-58 AT3G12110 765 / 0.0 actin-11 (.1) Potri.010G204300 [exp] 194 / 7e-58 AT3G12110 733 / 0.0 actin-11 (.1) Potri.016G045500 [exp] 194 / 9e-58 AT3G12110 767 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 194 / 9e-58 AT3G12110 767 / 0.0 actin-11 (.1) Potri.001G453600 [exp] 193 / 2e-57 AT5G09810 769 / 0.0 actin 7 (.1) Potri.011G148000 [exp] 192 / 5e-57 AT5G09810 731 / 0.0 actin 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006238 [exp] 767 / 0 AT1G13180 786 / 0.0 DISTORTED TRICHOMES 1, ARABIDOPSIS THALIANA ACTIN-RELATED PROTEIN 3, ACTIN-RELATED PROTEIN 3, Actin-like ATPase superfamily protein (.1) Lus10036948 [exp] 679 / 0 AT1G13180 700 / 0.0 DISTORTED TRICHOMES 1, ARABIDOPSIS THALIANA ACTIN-RELATED PROTEIN 3, ACTIN-RELATED PROTEIN 3, Actin-like ATPase superfamily protein (.1) Lus10006784 [exp] 196 / 3e-58 AT5G09810 769 / 0.0 actin 7 (.1) Lus10001694 [exp] 195 / 4e-58 AT3G12110 766 / 0.0 actin-11 (.1) Lus10005163 [exp] 195 / 4e-58 AT3G12110 766 / 0.0 actin-11 (.1) Lus10006783 [exp] 195 / 5e-58 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 195 / 5e-58 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005819 [exp] 195 / 5e-58 AT5G09810 778 / 0.0 actin 7 (.1) Lus10016259 [exp] 194 / 6e-58 AT3G46520 767 / 0.0 actin-12 (.1) Lus10029286 [exp] 194 / 7e-58 AT3G46520 768 / 0.0 actin-12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00022 [poplar] [flax] Actin Actin
Representative CDS sequence Show only first row Show all	>Potri.008G182700.4 pacid=42807154 polypeptide=Potri.008G182700.4.p locus=Potri.008G182700 ID=Potri.008G182700.4.v4.1 annot-version=v4.1 ATGGACCCCACATCTCGTCCTGCCGTCGTCATCGACTACGGTACCGGGTATACTAAGATGGGTTTTGCGGGAAATGTAGAGCCGTGTTTTATTTTACCAA CAGCAGTAGCAGTAAACGAGTCGTTTCTAAATCAATCTCGAACTTCTTCTTCGAAAGCGAATTGGCAAGCGCAGCACAGTGCAGGGGTTATGGCGGATCT AGATTTTTTTATAGGAGAGGAGGCGCTTGCCAAATCGAGATCTAGTAATACTTATAGTCTTAGCTATCCAATCAAACATGGTCAAGTTGATAACTGGGAC GCCATGGAAAGGTACTGGCAGCAGTGTATATTTAATTATTTGCGTTGCGATCCAGAGGATCATTACTTTTTATTGACTGAAAGCCCGCTTACTGCACCGG AGAGTCGTGAGTATACCGGTGAGATTATGTTCGAGACCTTTAATGTTCCTGGGCTTTATATTGCCGTCAATTCTGTGCTTGCTCTTGCAGCTGGTTACAC GACATCCAAGTGTGAGATGACAGGGGTTGTTGTGGATGTTGGAGATGGTGCTGCTCATGTTGTGCCTGTTGCAGATGGTTATGTTATTGGGAGCAGCATC AAGTCAATCCCTATTGCTGGCAAGGATGTTACTCTATTTATCCAGCAGCTCATGCGGGAAAGAGGAGAGAATGTACCCCCAGAAGATTCATTTGAAGTAG CTCGGAAAGTGAAGGAAACACATTGCTATACTTGTTCCGATATTGTCAAGGAGTTCAACAAGCATGACAAAGAACCAGCAAAGTATATTAAGCACTGGAG AGGTATTAAACCAAAAACAGGGGCACCATATTCCTGTGACATTGGATATGAGCGATTTCTTGGCCCTGAGGTATTCTTTAATCCTGAGATTTATAGCAGT GACTTTACCACTCCTTTACCAGCTGTGATAGACAAGTGTATTCAGTCTGCACCAATTGACACAAGGAGGGCTTTGTATAAGAATATAGTGTTGTCTGGAG GATCAACCATGTTCAAGGACTTTGGTAGAAGATTGCAAAGGGATTTGAAGAAGATTGTGGATACACGTGTTCTCACATCTGAAGCTAGACTTGGCGGGAA AATAAAATCACAACCAGTGGAAGTGAATGTAGTCAGTCATCCTATCCAGAGATTTGCGGTTTGGTTTGGTGGTTCAGTACTAGCATCAACGCCTGAGTTT TTTGCGGCTTGCCATACAAAAGCAGAATATGAAGAATATGGAGCAAGCATATGCCGCACAAATCCTGTTTTCAAGGGCATGTATTGA
AA sequence Show only first row Show all	>Potri.008G182700.4 pacid=42807154 polypeptide=Potri.008G182700.4.p locus=Potri.008G182700 ID=Potri.008G182700.4.v4.1 annot-version=v4.1 MDPTSRPAVVIDYGTGYTKMGFAGNVEPCFILPTAVAVNESFLNQSRTSSSKANWQAQHSAGVMADLDFFIGEEALAKSRSSNTYSLSYPIKHGQVDNWD AMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGAAHVVPVADGYVIGSSI KSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKETHCYTCSDIVKEFNKHDKEPAKYIKHWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSS DFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFGRRLQRDLKKIVDTRVLTSEARLGGKIKSQPVEVNVVSHPIQRFAVWFGGSVLASTPEF FAACHTKAEYEEYGASICRTNPVFKGMY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Potri.008G182700 [exp]	0	1
AT5G60720			Protein of unknown function, D...		Potri.009G009500 [exp]	2.00	0.9410
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.001G352300 [exp]	2.23	0.9526
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252500 [exp]	4.89	0.9480
AT3G27960			Tetratricopeptide repeat (TPR)...		Potri.008G094700 [exp]	5.19	0.9451
AT2G28315			Nucleotide/sugar transporter f...		Potri.009G011100 [exp]	5.47	0.9404
AT2G40120			Protein kinase superfamily pro...		Potri.010G188400 [exp]	6.00	0.9398
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.015G060100 [exp]	6.92	0.9275
AT1G04750		ATVAMP7B, ATVAM...	VESICLE-ASSOCIATED MEMBRANE PR...		Potri.003G177700 [exp]	11.22	0.9361	SAR1.5
AT5G50420			O-fucosyltransferase family pr...		Potri.003G073500 [exp]	11.22	0.9226	FUT13.1
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Potri.007G047500 [exp]	11.53	0.9396

Compare expression of checked genes

Potri.008G182700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.