Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13170 472 / 1e-161 ORP1D OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) AT4G08180 317 / 1e-101 ORP1C OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) AT2G31020 297 / 9e-95 ORP1A OSBP(oxysterol binding protein)-related protein 1A (.1) AT4G22540 263 / 7e-82 ORP2A OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) AT4G12460 251 / 1e-77 ORP2B OSBP(oxysterol binding protein)-related protein 2B (.1), OSBP(oxysterol binding protein)-related protein 2B (.2) AT2G31030 215 / 6e-66 ORP1B OSBP(oxysterol binding protein)-related protein 1B (.1) AT5G02100 72 / 1e-13 UNE18, ORP3A UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) AT3G09300 70 / 4e-13 ORP3B OSBP(oxysterol binding protein)-related protein 3B (.1) AT1G77730 67 / 1e-12 Pleckstrin homology (PH) domain superfamily protein (.1) AT5G59420 67 / 3e-12 ORP3C OSBP(oxysterol binding protein)-related protein 3C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G051400 [exp] 538 / 0 AT1G13170 1211 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.005G172900 [exp] 337 / 2e-109 AT4G08180 1158 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.002G088000 [exp] 322 / 9e-104 AT4G08180 1144 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.019G015111 [exp] 277 / 8e-87 AT4G08180 889 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.001G121700 [exp] 276 / 1e-86 AT4G22540 1109 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.003G111600 [exp] 267 / 5e-83 AT4G22540 1100 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.006G086400 [exp] 67 / 5e-12 AT3G09300 764 / 0.0 OSBP(oxysterol binding protein)-related protein 3B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036949 [exp] 484 / 2e-166 AT1G13170 1241 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10006237 [exp] 449 / 1e-152 AT1G13170 1219 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10028087 [exp] 329 / 2e-106 AT4G08180 1147 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10025635 [exp] 312 / 6e-100 AT4G08180 1142 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10024613 [exp] 266 / 7e-83 AT4G22540 1065 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10035967 [exp] 250 / 7e-77 AT4G08180 803 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10032251 [exp] 230 / 2e-69 AT4G22540 979 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10025695 [exp] 206 / 3e-60 AT4G08180 887 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10024386 [exp] 66 / 1e-11 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) Lus10010843 [exp] 64 / 4e-11 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01237 [poplar] [flax] Oxysterol_BP Oxysterol-binding protein
Representative CDS sequence Show only first row Show all	>Potri.008G182766.1 pacid=42807649 polypeptide=Potri.008G182766.1.p locus=Potri.008G182766 ID=Potri.008G182766.1.v4.1 annot-version=v4.1 ATGAGAATAATATTTAAAAAACACCCATCAACACCTATTTTTTCAAATGATTCGTGGCTTGAGGCCCTGCAGGCTGCTAAAGATCTTTTCCCTAGAGAGT TGACTAGCAGTGATTATTCACCTTCTGAAGATGTCTTCATTTCAACTGAGAAGTTAAGATCACGATTAGTGCAGGAAGGTGTTGGTGAGACAGTCATCAA AGAATGTGAATCCATTATGTTATCAGAAGTCTCTGAGCTGCAAAACAAGTTGAAGGCTCTTCAACATAAACACATCATGGTGTTAGACACATTGAGGCAA TTAGAGACAGAGAAAATAGAGCTGGAAGCTACTGTAGTAGATGAAACGAAGGAACGTGATTCATATTGTGGACAAGCAAATAGAACATTTAGTGATTTCT ATTCTGTAATGTCAGAGGCTAGTGCTAGCGATTCCGATGCTGACAATGAAAGTCAAGATGGAGCAGATGTTGAATCAGATGAAAATGATGGTTTATTCTT TGATACAAATGATTTTTTGTCCACTGATGCTTTAAGAAGCTCTTCCTATCGGAGTAGGGCAGCTACTGGAAATACAGATATATATGATAAAGACCCCTTT TTATCTGATCATTTGCGTGGGTTTGAGAAGGAGATTAGGACAGTTCAATATCCGTATGTTAAAAGAAGAGATATTCTGCCGGAACCAAAGGAGAAAGAGA AACATGTTGGTCTGTGGTCAATTATCAAGGACAATATCGGGAAGGACTTATCTGGAGTTTGTCTTCCTGTTTATTTTAACGAACCACTCTCTTTGCTGCA GAAGTGCTTTGAGGATTTGGAGTACTCATACTTGGTTGGTCAAGCTTTGGAATGGGGAAAGCAGGGGAACGATTTGATGAGAATTCTAAACGATGCAGCT TTTGCTGTATCCGGGTATGCCTCAACAGAAGGTCGTCAGTGCAAACCCTTCAACCCTCTCCTTGGGGAAACCTACGAGGCTGCCTATCCAGATAAAGGAC TTCGTTTTTTCTGA
AA sequence Show only first row Show all	>Potri.008G182766.1 pacid=42807649 polypeptide=Potri.008G182766.1.p locus=Potri.008G182766 ID=Potri.008G182766.1.v4.1 annot-version=v4.1 MRIIFKKHPSTPIFSNDSWLEALQAAKDLFPRELTSSDYSPSEDVFISTEKLRSRLVQEGVGETVIKECESIMLSEVSELQNKLKALQHKHIMVLDTLRQ LETEKIELEATVVDETKERDSYCGQANRTFSDFYSVMSEASASDSDADNESQDGADVESDENDGLFFDTNDFLSTDALRSSSYRSRAATGNTDIYDKDPF LSDHLRGFEKEIRTVQYPYVKRRDILPEPKEKEKHVGLWSIIKDNIGKDLSGVCLPVYFNEPLSLLQKCFEDLEYSYLVGQALEWGKQGNDLMRILNDAA FAVSGYASTEGRQCKPFNPLLGETYEAAYPDKGLRFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Potri.008G182766 [exp]	0	1
AT5G05240			Uncharacterised conserved prot...		Potri.013G091100 [exp]	2.44	0.9110
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Potri.010G031800 [exp]	2.82	0.9098
AT1G73240			unknown protein		Potri.003G213050 [exp]	5.47	0.8977
AT1G50240		FU	FUSED, Protein kinase family p...		Potri.019G052500 [exp]	5.65	0.9140
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Potri.016G024000 [exp]	6.16	0.8698
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Potri.017G110400 [exp]	6.92	0.8456
AT2G04660		APC2	anaphase-promoting complex/cyc...		Potri.008G089600 [exp]	10.95	0.8369
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Potri.003G109800 [exp]	12.44	0.8574
AT1G20060			ATP binding microtubule motor ...		Potri.013G068501 [exp]	14.00	0.8878
AT1G45207			Remorin family protein (.2)		Potri.002G125200 [exp]	14.07	0.8803

Compare expression of checked genes

Potri.008G182766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.