Plant FIBer expression Database

Potri.008G182900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G31520 632 / 0 SDA1 family protein (.1)
AT1G13160 580 / 0 ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006236
[exp]
761 / 0 AT1G13160 822 / 0.0 ARM repeat superfamily protein (.1)
Lus10036950
[exp]
738 / 0 AT1G13160 790 / 0.0 ARM repeat superfamily protein (.1)
Lus10028318
[exp]
701 / 0 AT4G31520 697 / 0.0 SDA1 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05285 SDA1 SDA1
PF08158 NUC130_3NT NUC130/3NT domain
Representative CDS sequence
>Potri.008G182900.1 pacid=42806627 polypeptide=Potri.008G182900.1.p locus=Potri.008G182900 ID=Potri.008G182900.1.v4.1 annot-version=v4.1
ATGGCGGATTCCTTGTCGGCGTCGGGGCGGAGCTCGGAGAAGCTGAGCCTTCAATCTCTCCAATCCAAAATGAAAATTGACCCAGAAGGTTACGAAACGG
AGCTCGGCTTGGTTTACAACCAATTTAAGTCCGCTTTGGATCTTTTTCAACAGCAAGCAGCTCTCAGTTTCGCCTCCTCCTCCGGTGTCTGCGCTGACCC
CACTATTTACAAGGACCTCAGTGACCGCGCCACTTTTTTGTCTCATGTTACACCTTTTTACCCGAAGCAGCTTGCTGAGTTCCCAGCTCAACTCGCTGAG
TTTCTCAAATCGTCTGCTCGGACTCTGCCTTCGGGACTTCGGTGTCATGTTACTCAAGCGCTTATTCTACTGATTAATCGAGATATGGTTGATATTAGTG
AAACTCTAGCATTGTTCATGGAGCTTCAAACACTGGGAGATAGGACATTGAGGAATTTGGCTTTTACTCATGTTGTTCATAGCATTAGGAGGATGAATAA
GAAGCATAAAAATGAGGCTAAGAATCGGGCCCTTCAAAATATCCTCTTTTCCTTGCTACAGCAAGATGATGAAGCACGAGCGAAGAGAGCACTCATCACA
CTATGTGAGCTTCATCGAAGGAAGGTGTGGTTCGATGATAGAACTGCAAATTCAATTTGTATGGCATGTTTTCATTCATCATCAAGAATCATGATTGCTG
CTCTGTCTTTTCTCCTCGATTATGAGAAGATTGAAGATAATGACAATGATGATAGCGATGCTTCAAGTGGCGAAGACGATCCAAATCCTCGAACAGCTCA
AGTTGTCATTAGTAAAGAGTCTATTTATAAGGCACACAATAAAGGTACTGTAGCTAGCAAGAAGAAAAAGAAAGCAAAACTGCAGCGGGCCATACGTAGC
ATGAAAAGGCAGCAAAGATTGTCATCAGAAAACAACAATTCAAATTATTATTCACCATTCAACCATCTTAAAGACGCACAGGGGTTTGCTGAGAGGCTAT
TTTCTCGCCTTCAGACTTGCAATGAACGTTTTGAGGTCAAGATGATGATGTTGAAAGTAATTGCTCGAACTGTGGGGCTCCACCGCTTGATTTTATTAAA
CTTTTATCCTTTTCTTCAGAAATATGTTCAGCCACATCAGCGTGACATCACAAATTTACTTGCAGCAGCTGTCCAGGCCTGTCATGATCTGGTGCCTCCT
GATGCAGTTGAGCCATTATTCAAACAAATAGTAAATCAATTTGTACATGATCACTCGCGTCCTGAGGCCATTGCTATTGGACTGAATGTGATCAGGGAAA
TATGCTTGCGAATACCTTTGTTGATGAATGAAGATTTACTGCAAGACCTTGTATTATACAAGAAATCTCATGAGAAGGCAGTTTCAATAGCTGCTCGTTC
ACTCATTACTTTATTCAGAGAGGTTTGTCCCTCTCTGCTGATTAAGAAAGATCGAGGTCGTCCCATTGACCCAAAAGCTAGGCCGAAGGCCTATGGAGAA
GTCAATATTGTCAGCAGTGTTCCTGGTGTTGAGTTGTTAGAAGAACTTAATGATGATGATGATGATGATGAAGACAAGGAGGACAGCGATGATGTTGATG
ATTTGGCATCCCGTGGCTCTGATGATGATTCTGAAAATGAGGAGATGGTTTCTGCCAGTGATGAAGGAGATCAGATTTACAGTGATGACGCTGAAAGTGA
GGATGGTGACGTGCAAGATGGCTCAGTTGATGAAGATGGTGATGATGCTGTAGACAATGACAGTGGTGGTGGTGAGGGGGGGGACGAGGATGAGGATCAG
GAGGAGAATGATGAAGACAGTTATGCGAGGGCTATCATAAATAAAGTTAACAAATCTACTGCTAGAAAGAGGAAGTTCTCTGATTTTGATGGGCAACTTC
TAGCAGCTGATACAAGTTTGCGGGCTTTAAAGAAAATGACAGAAGAGAAGTTGAAGAAACCACCATCAGACTCTACAGATGGTATTCTTTCTAATGAAGA
CTTCCAAAGAATCAAGGAACTTACGGCCAAGAAGGATGCCAGGATTGCTTTAAATCGGCAAGGATTTAAGGTTCCAAGTTCTGATGATCTGAGTGCTAAG
CGGGTGGATCCTGCTACGCTTGAAGTTCATGTACGGGCGAGGCTAAACAAGGAAGAAAGATTAGCGCTGGTGAGAGCAGGGAGAGAGGATAGAGAGAGCT
ACAAATCTAGAATCGCCGTAAAACAGAAAAAGACTGGCGGGCAGAGCAACAGGCAGAAAGAACACAAAAAGCAGATGCCTCTTGCTGCAAAAAGGGCCAA
GGTAGCAAGATCTCGACAAGAGAAAAAGAAAAAGCAAAGCCTTTCTGGCAAGCAGTTCCGGGGGAAGAAAGCATGGAAATGA
AA sequence
>Potri.008G182900.1 pacid=42806627 polypeptide=Potri.008G182900.1.p locus=Potri.008G182900 ID=Potri.008G182900.1.v4.1 annot-version=v4.1
MADSLSASGRSSEKLSLQSLQSKMKIDPEGYETELGLVYNQFKSALDLFQQQAALSFASSSGVCADPTIYKDLSDRATFLSHVTPFYPKQLAEFPAQLAE
FLKSSARTLPSGLRCHVTQALILLINRDMVDISETLALFMELQTLGDRTLRNLAFTHVVHSIRRMNKKHKNEAKNRALQNILFSLLQQDDEARAKRALIT
LCELHRRKVWFDDRTANSICMACFHSSSRIMIAALSFLLDYEKIEDNDNDDSDASSGEDDPNPRTAQVVISKESIYKAHNKGTVASKKKKKAKLQRAIRS
MKRQQRLSSENNNSNYYSPFNHLKDAQGFAERLFSRLQTCNERFEVKMMMLKVIARTVGLHRLILLNFYPFLQKYVQPHQRDITNLLAAAVQACHDLVPP
DAVEPLFKQIVNQFVHDHSRPEAIAIGLNVIREICLRIPLLMNEDLLQDLVLYKKSHEKAVSIAARSLITLFREVCPSLLIKKDRGRPIDPKARPKAYGE
VNIVSSVPGVELLEELNDDDDDDEDKEDSDDVDDLASRGSDDDSENEEMVSASDEGDQIYSDDAESEDGDVQDGSVDEDGDDAVDNDSGGGEGGDEDEDQ
EENDEDSYARAIINKVNKSTARKRKFSDFDGQLLAADTSLRALKKMTEEKLKKPPSDSTDGILSNEDFQRIKELTAKKDARIALNRQGFKVPSSDDLSAK
RVDPATLEVHVRARLNKEERLALVRAGREDRESYKSRIAVKQKKTGGQSNRQKEHKKQMPLAAKRAKVARSRQEKKKKQSLSGKQFRGKKAWK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G31520 SDA1 family protein (.1) Potri.008G182900
[exp]
0 1
AT1G72320 APUM23 pumilio 23 (.1.2.3) Potri.003G073000
[exp]
1.00 0.9277
AT1G20300 Pentatricopeptide repeat (PPR)... Potri.005G245400
[exp]
2.00 0.9212
AT1G15440 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN ... Potri.003G060500
[exp]
2.44 0.9088
AT1G59760 AtMTR4 homolog of yeast MTR4, RNA hel... Potri.004G228700
[exp]
2.64 0.9079
AT2G43650 EMB2777 EMBRYO DEFECTIVE 2777, Sas10/U... Potri.013G125800
[exp]
3.16 0.9117
AT5G57120 unknown protein Potri.006G073100
[exp]
3.87 0.9132
AT2G44270 ROL5 repressor of lrx1 (.1.2) Potri.005G083500
[exp]
4.24 0.8627
AT3G16810 APUM24 pumilio 24 (.1) Potri.008G211400
[exp]
5.09 0.8767
AT2G17250 EMB2762 EMBRYO DEFECTIVE 2762, CCAAT-b... Potri.009G168100
[exp]
7.07 0.8839
AT4G04940 transducin family protein / WD... Potri.006G078900
[exp]
7.34 0.8840

Potri.008G182900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.