Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26120 455 / 2e-152 TEL1 terminal EAR1-like 1 (.1) AT1G67770 226 / 9e-66 TEL2 terminal EAR1-like 2 (.1) AT1G37140 131 / 1e-34 MCT1 MEI2 C-terminal RRM only like 1 (.1.2) AT5G61960 138 / 1e-33 AML1 MEI2-like protein 1 (.1.2) AT5G07290 136 / 5e-33 AML4 MEI2-like 4 (.1) AT1G29400 130 / 2e-31 AML5 MEI2-like protein 5 (.1.2) AT4G18120 130 / 2e-31 AML3 MEI2-like 3 (.1.2) AT5G07930 110 / 1e-26 MCT2 MEI2 C-terminal RRM only like 2 (.1.2.3) AT2G42890 114 / 4e-26 AML2, MEI2 MEI2-like 2 (.1.2.3) AT2G37340 56 / 3e-08 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G051100 [exp] 937 / 0 AT3G26120 259 / 3e-77 terminal EAR1-like 1 (.1) Potri.013G084400 [exp] 145 / 4e-38 AT3G26120 150 / 2e-40 terminal EAR1-like 1 (.1) Potri.002G088200 [exp] 142 / 9e-37 AT1G37140 159 / 3e-46 MEI2 C-terminal RRM only like 1 (.1.2) Potri.005G202000 [exp] 140 / 2e-34 AT1G29400 778 / 0.0 MEI2-like protein 5 (.1.2) Potri.012G107100 [exp] 137 / 2e-33 AT5G07290 750 / 0.0 MEI2-like 4 (.1) Potri.015G106000 [exp] 135 / 1e-32 AT5G61960 767 / 0.0 MEI2-like protein 1 (.1.2) Potri.002G059800 [exp] 134 / 1e-32 AT1G29400 781 / 0.0 MEI2-like protein 5 (.1.2) Potri.001G067300 [exp] 129 / 1e-30 AT5G61960 627 / 0.0 MEI2-like protein 1 (.1.2) Potri.003G162700 [exp] 126 / 8e-30 AT5G07290 645 / 0.0 MEI2-like 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036953 [exp] 273 / 3e-82 AT3G26120 429 / 7e-143 terminal EAR1-like 1 (.1) Lus10006234 [exp] 270 / 1e-81 AT3G26120 431 / 2e-144 terminal EAR1-like 1 (.1) Lus10002047 [exp] 182 / 6e-53 AT3G26120 167 / 1e-48 terminal EAR1-like 1 (.1) Lus10002046 [exp] 169 / 3e-45 AT3G26120 298 / 4e-94 terminal EAR1-like 1 (.1) Lus10018194 [exp] 137 / 5e-35 AT1G37140 143 / 1e-40 MEI2 C-terminal RRM only like 1 (.1.2) Lus10025641 [exp] 133 / 2e-33 AT1G37140 142 / 6e-40 MEI2 C-terminal RRM only like 1 (.1.2) Lus10025640 [exp] 127 / 1e-32 AT1G37140 131 / 3e-37 MEI2 C-terminal RRM only like 1 (.1.2) Lus10018195 [exp] 125 / 2e-31 AT1G37140 128 / 2e-35 MEI2 C-terminal RRM only like 1 (.1.2) Lus10004591 [exp] 130 / 3e-31 AT1G29400 908 / 0.0 MEI2-like protein 5 (.1.2) Lus10011968 [exp] 130 / 4e-31 AT1G29400 900 / 0.0 MEI2-like protein 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] RRM PF04059 [poplar] [flax] RRM_2 RNA recognition motif 2
Representative CDS sequence Show only first row Show all	>Potri.008G183000.1 pacid=42806442 polypeptide=Potri.008G183000.1.p locus=Potri.008G183000 ID=Potri.008G183000.1.v4.1 annot-version=v4.1 ATGGAAGAAAACGGCTCTGTTCAGTTTCCGGGAAATCTAGACCCAAGAGCACAAGAGTTCAGGCCTAGACGTGATAACCTTCACAATTTCTCCCCAAAGT TTCTTCCTTTCGGACCGCCGCCTCCGCCGCCGCCACCACCACCACCTCAGCTTCCGCACCAAGTCTACTACACCTACACCCCCCAAGCGTTGCCGTTTAG CGACTTTGTAGGTTTCGTTCAGTATGATCATCATATACCTCCGGCGTACGTTAGCGTGGAACCTCTTCCCCCTCTTCCTCCTACCGGGGCGCCAACTCGG ACTCTGGTATTGAGTTCGGTGCCGAGCGAAGTGAACGAGTCATTGATTAGGAGAGAATTGGAGGTTTTTGGAGAAGTTAGAGGGGTCCAGATGGAAAGAG TTGGTTATGGGACTGTGACCGTTCATTTCTACGATCTAAGACATGCAGAGAGAGCCTTGAGGGAGATACGAGAGCAGCACATGCTGCATCAAGCCAGGCT AAGGAACTTCTTTATTCAAAATTCTGAGAGCATTAGCTTCAATATTGCACCAACACCACCACCGCCGGCGCGTGGTGTAATTGCTGGTTGTGTGGTTTGG GCTCAGTTTATTATTCCGTCGTGTAACGAGGTGCCTGATGGACAGAATCAAGGGACCCTTGTGGTCTTCAATTTGGATCCCAATGTTTCTACTAGAAGCC TTAAAGAAATTTTCCAAGCTTTTGGTGCTGTCAAGGAGGTGAGAGAGACACCTTTGAAGAGGCACCAAAGGTTTATAGAGTTTTACGATGTTAGAGATGC AGCCAAGGCCCTTCGAGAGATGAATGGAAAGGAAATTTATGGAAAGCAAGTTGATATTGAGTTTAGTCGCCCTGGTGGGCATGGGAAGAAGTTTTTTAAT GCCAGGCCCAGGGCCACTTCCAAAAACTCCTTTACTACTCCTGTCTTTGACTCCACAACCAACCTTCGCCATTCCAAAGTTGCAACCTTTGTGTCTCCGC AACCTCCACCATTGCTTCATAGATTCTCCTCCGGCTGCTCACCTCCAAATGTTTCCCCTCGCTCATTTCTGTCGGAAACTCAATCCTCAGCTGGAAAGAA ACCGTCTGGTGATCCTAGCGAAGGAAACCCTATTGAGGCTTCAATTGAAGCTTCTTTGGGGTGTTTGTCATTGGGTGGAGACGTAATTGTTGGGAAGGTT GCTTATCGTGGCCCTCCAAAGAGAAGTTTGAAAAAGAGCCAGTCTTTTACATCTACAAAGCAGCAACAGAAGAGTGCCAAGTCTTGGAAGGGATCAAGGC AAGCGAAGAAGCTTGATAGTCGTTTTCTTATAAGTGATGAATCCATGGTGGAAACCAGCGGTAGTGATTCCAGGACCACTGTCATGATCAAGAACATACC CAATAAGTACAGTCAGAAGCTGTTGTTGAATATGCTGGACAATCACTGCATTCACTGCAACGAGCAGATAGCCAACGGGGATGACCAGCCCTTGTCTTCT TATGATTTTTTATATCTTCCAATTGACTTCAACAACAAATGCAATGTGGGATATGGGTTCGTGAACATGACATCCCCGCAGGCAGCATGGAGGCTCTACA AGGCCTTTCATAATCAACATTGGGAGGTCTTCAGCTCTAGGAAAATCTGTGCAGTGACTTATGCTAGAGTTCAGGGATTGGAAGCGTTGAAGGAGCACTT TAAGAACTCAAAGTTCCCATGCGAGATGGACCACCATCTGCCAGTTGTTTTCTCTCCTCCTCGAGACGGGAGGCAACAGACGGAGCCTCTTCCCATTATT GGCCACAAGCACGATCAACAGCCCATCAATATTATTCTTGGTGACTCCATCGCGTGCACCCACCATGAGATAGACGGTGTGAATGATAACCTCAAGACCT GCAACAGATTATTTGGTGACACTGACCAAGGAGGAGAAAGCCAGCTCAAATGCAGCAGCAGCAGCAGCAGCCAAAATGGCGGCGATATTGGTGATGATGA TAAAGACAGTAGTAGTGGCAGCAGCTAG
AA sequence Show only first row Show all	>Potri.008G183000.1 pacid=42806442 polypeptide=Potri.008G183000.1.p locus=Potri.008G183000 ID=Potri.008G183000.1.v4.1 annot-version=v4.1 MEENGSVQFPGNLDPRAQEFRPRRDNLHNFSPKFLPFGPPPPPPPPPPPQLPHQVYYTYTPQALPFSDFVGFVQYDHHIPPAYVSVEPLPPLPPTGAPTR TLVLSSVPSEVNESLIRRELEVFGEVRGVQMERVGYGTVTVHFYDLRHAERALREIREQHMLHQARLRNFFIQNSESISFNIAPTPPPPARGVIAGCVVW AQFIIPSCNEVPDGQNQGTLVVFNLDPNVSTRSLKEIFQAFGAVKEVRETPLKRHQRFIEFYDVRDAAKALREMNGKEIYGKQVDIEFSRPGGHGKKFFN ARPRATSKNSFTTPVFDSTTNLRHSKVATFVSPQPPPLLHRFSSGCSPPNVSPRSFLSETQSSAGKKPSGDPSEGNPIEASIEASLGCLSLGGDVIVGKV AYRGPPKRSLKKSQSFTSTKQQQKSAKSWKGSRQAKKLDSRFLISDESMVETSGSDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIANGDDQPLSS YDFLYLPIDFNNKCNVGYGFVNMTSPQAAWRLYKAFHNQHWEVFSSRKICAVTYARVQGLEALKEHFKNSKFPCEMDHHLPVVFSPPRDGRQQTEPLPII GHKHDQQPINIILGDSIACTHHEIDGVNDNLKTCNRLFGDTDQGGESQLKCSSSSSSQNGGDIGDDDKDSSSGSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Potri.008G183000 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Potri.008G007866 [exp]	2.23	0.9516
AT1G03670			ankyrin repeat family protein ...		Potri.013G133800 [exp]	11.22	0.9294
AT2G47020			Peptide chain release factor 1...		Potri.002G188200 [exp]	13.41	0.9353
AT1G62770			Plant invertase/pectin methyle...		Potri.001G119200 [exp]	15.87	0.9398
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.004G044400 [exp]	17.54	0.9428
AT1G67720			Leucine-rich repeat protein ki...		Potri.008G181200 [exp]	21.35	0.8986
					Potri.004G184650 [exp]	23.40	0.9434
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Potri.011G031100 [exp]	23.57	0.8747
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Potri.008G151500 [exp]	23.62	0.9205	LOX1.8
AT1G03670			ankyrin repeat family protein ...		Potri.013G133700 [exp]	23.87	0.9430

Compare expression of checked genes

Potri.008G183000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.