Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50260 489 / 2e-174 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G48340 464 / 8e-165 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT3G48350 441 / 2e-155 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1) AT4G35350 345 / 7e-118 XCP1 xylem cysteine peptidase 1 (.1.2) AT5G43060 346 / 8e-117 Granulin repeat cysteine protease family protein (.1) AT1G20850 336 / 2e-114 XCP2 xylem cysteine peptidase 2 (.1) AT5G45890 334 / 1e-113 SAG12 senescence-associated gene 12 (.1) AT3G19390 337 / 2e-113 Granulin repeat cysteine protease family protein (.1) AT4G36880 330 / 1e-111 CP1 cysteine proteinase1 (.1) AT1G47128 329 / 6e-110 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G087400 [exp] 511 / 0 AT5G50260 550 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.012G090900 [exp] 501 / 4e-179 AT5G50260 561 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.015G087500 [exp] 490 / 7e-175 AT5G50260 530 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.011G064900 [exp] 365 / 6e-126 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 364 / 2e-125 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Potri.004G056100 [exp] 363 / 3e-125 AT5G45890 419 / 2e-147 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 362 / 4e-125 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.004G056258 [exp] 361 / 3e-124 AT5G45890 417 / 8e-147 senescence-associated gene 12 (.1) Potri.004G056316 [exp] 361 / 3e-124 AT5G45890 419 / 3e-147 senescence-associated gene 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033040 [exp] 485 / 8e-173 AT5G50260 555 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10013674 [exp] 481 / 3e-171 AT5G50260 554 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10042078 [exp] 480 / 7e-171 AT5G50260 538 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10018083 [exp] 479 / 1e-170 AT5G50260 533 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10014087 [exp] 360 / 6e-122 AT5G43060 622 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10006459 [exp] 348 / 4e-121 AT5G50260 307 / 4e-105 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10020730 [exp] 350 / 1e-119 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10042295 [exp] 349 / 1e-119 AT5G45890 402 / 7e-141 senescence-associated gene 12 (.1) Lus10026362 [exp] 349 / 1e-119 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10002199 [exp] 348 / 3e-119 AT5G45890 361 / 2e-124 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00112 [poplar] [flax] Peptidase_C1 Papain family cysteine protease CL0125 [poplar] [flax] PF08246 [poplar] [flax] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Potri.008G183100.1 pacid=42808668 polypeptide=Potri.008G183100.1.p locus=Potri.008G183100 ID=Potri.008G183100.1.v4.1 annot-version=v4.1 ATGGATACGAGAAAAGTCATCCTGGCTGTATTTTCAGTGGTTCTGGTTTTCAGGCTTGCTGATAGTTTTGACTACACTGAAGAGGACTTGGCATCAGAGG AGAGACTACGGGACTTGTATGAGAGATGGAGGAGCCATCACACTGTTTCTCGCAGCCTCGCTGAAAAACAAGAGCGTTTCAATGTATTCAAGGAAAATTT AAAACATATTCACAAGGTGAACCACAAGGACAGGCCTTATAAGTTGAAACTGAATAGCTTTGCTGATATGACCAACCATGAGTTCTTGCAACACTATGGA GGCTCAAAGGTTAGCCACTACAGGGTGCTCCGTGGACAAAGACAGGGAACTGGGTCCATGCATGAGGATACAAGTAAGCTTCCTTCTTCTGTTGACTGGA GGAAGAATGGAGCAGTAACCGGTATAAAGGACCAAGGCAAATGTGGTAGCTGCTGGGCATTCTCAACTGTAGCTGCAGTGGAAGGTATAAACAAAATCAA AACGGGAGAGCTGATCTCTCTATCTGAGCAAGAGCTGGTTGATTGCGATTCTGATAACCATGGCTGCAATGGAGGATTGATGGAAGACGCATTTAATTTT ATTAAGCAAATTGGTGGATTAACATCAGAGAATACGTATCCATACAGAGCTAAAGAGGAGCCATGTGACTCAAACAAGATGAATTCTCCTGTTGTGAATA TCGATGGGTACGAAATGGTGCCTGAAAATGATGAGAATGCATTGATGAAAGCTGTTGCAAACCAACCTGTAGCAATTGCAATGGATGCTGGTGGCAAGGA TCTCCAGTTCTACTCGGAGGGAGTATTCACTGGAGATTGCGGCACAGAGCTGAATCATGGAGTAGCACTTGTGGGCTATGGGACGACTCAAGATGGAACG AAGTACTGGATAGTAAAGAATTCATGGGGCACCGATTGGGGAGAGAAGGGTTACATAAGAATGCAACGTGGGATTGATGCAGAAGAAGGATTGTGCGGCA TAACAATGGAGGCCTCCTACCCAGTCAAGTTGCGCTCAGACAACAAGAAAGCACCATCTCGCAAGGATGAACTCTAG
AA sequence Show only first row Show all	>Potri.008G183100.1 pacid=42808668 polypeptide=Potri.008G183100.1.p locus=Potri.008G183100 ID=Potri.008G183100.1.v4.1 annot-version=v4.1 MDTRKVILAVFSVVLVFRLADSFDYTEEDLASEERLRDLYERWRSHHTVSRSLAEKQERFNVFKENLKHIHKVNHKDRPYKLKLNSFADMTNHEFLQHYG GSKVSHYRVLRGQRQGTGSMHEDTSKLPSSVDWRKNGAVTGIKDQGKCGSCWAFSTVAAVEGINKIKTGELISLSEQELVDCDSDNHGCNGGLMEDAFNF IKQIGGLTSENTYPYRAKEEPCDSNKMNSPVVNIDGYEMVPENDENALMKAVANQPVAIAMDAGGKDLQFYSEGVFTGDCGTELNHGVALVGYGTTQDGT KYWIVKNSWGTDWGEKGYIRMQRGIDAEEGLCGITMEASYPVKLRSDNKKAPSRKDEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Potri.008G183100 [exp]	0	1
AT5G43150			unknown protein		Potri.013G037800 [exp]	6.16	0.7089
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150500 [exp]	13.52	0.7004	CYP76.3
					Potri.010G133401 [exp]	17.02	0.7339
AT1G58122		CPuORF45	conserved peptide upstream ope...		Potri.002G104450 [exp]	35.49	0.6730
AT5G39130			RmlC-like cupins superfamily p...		Potri.004G180100 [exp]	41.47	0.6125
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Potri.007G021300 [exp]	51.96	0.6218
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Potri.008G138600 [exp]	60.62	0.5951
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413300 [exp]	73.86	0.6064
AT3G01820			P-loop containing nucleoside t...		Potri.012G095700 [exp]	85.69	0.5647
AT5G61620	MYB		myb-like transcription factor ...		Potri.001G080300 [exp]	114.16	0.5277

Compare expression of checked genes

Potri.008G183100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.