Plant FIBer expression Database

Potri.008G183400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G13130 675 / 0 Cellulase (glycosyl hydrolase family 5) protein (.1)
AT3G26130 642 / 0 Cellulase (glycosyl hydrolase family 5) protein (.1)
AT3G26140 618 / 0 Cellulase (glycosyl hydrolase family 5) protein (.1)
AT5G17500 586 / 0 Glycosyl hydrolase superfamily protein (.1)
AT5G16700 485 / 8e-168 Glycosyl hydrolase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G049700
[exp]
1006 / 0 AT1G13130 679 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Potri.010G049800
[exp]
731 / 0 AT1G13130 544 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Potri.001G097901
[exp]
375 / 6e-124 AT1G13130 393 / 2e-131 Cellulase (glycosyl hydrolase family 5) protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011404
[exp]
733 / 0 AT1G13130 605 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10006462
[exp]
725 / 0 AT1G13130 601 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10011403
[exp]
706 / 0 AT1G13130 610 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10006461
[exp]
704 / 0 AT1G13130 612 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10024686
[exp]
370 / 1e-121 AT3G26140 364 / 4e-120 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10032312
[exp]
310 / 3e-99 AT3G26140 298 / 2e-95 Cellulase (glycosyl hydrolase family 5) protein (.1)
Lus10005737
[exp]
62 / 6e-12 AT3G26130 66 / 2e-14 Cellulase (glycosyl hydrolase family 5) protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0058 Glyco_hydro_tim PF00150 Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence
>Potri.008G183400.2 pacid=42806739 polypeptide=Potri.008G183400.2.p locus=Potri.008G183400 ID=Potri.008G183400.2.v4.1 annot-version=v4.1
ATGGATAGGATAGTTTTCTTCTCTTTTCTTTCCATCTTCTCTTTTCTTGTAACTTTCTCTGATGTGATGATACCACAAAAGCATGTCACGGCACTCCCTC
TGTCTACTAACTCACGGTGGATCGTGGACGAAAACGGGCAAAGAGTGAAGCTGGCATGCGTGAATTGGGTATCACATCTCGAGGTCATGGTAGCCGAGGG
GCTTAGCGAGCAGCCCATGGATGCTATCGCCAAGCGGATTGTGTCCATGGGGTTCAACTGTGTTAGGCTCACCTGGCCAGTTTTCCTGGTAACCAATGAC
ACTCTGGGGTCTCTCACTGTAAGACAATCTCTCCGAAGCCTTGGTCTGCTCGAATCAATCTCTGGTATCCAGGCCAACAACCCCTCCATCATTGATCTCC
CCCTCCTTAACGTTTACCAGGCAGTGGTGTCTAGCCTTGGGGATAATAATGTGATGGTGATATTGGACAATCACATAAGCAAGCCTGGTTGGTGCTGCAG
TAATTCTGACGGCAATGGTTTCTTCGGTGACCAATACTTCGATCCCGATCTATGGATCACAGGTCTAACTAGAATGGCGAGCATGTTTAATGGTGTGCCT
AATGTGGTTGGCATGAGCTTGAGGAATGAGCTTCGAGGCCCCAAACAAAACGTCAATGATTGGTACAGGTACATGCAAAAAGGAGCTGAAGCAGTGCACT
CTGCGAACCCCGATGTTATTGTCATTCTATCGGGCCTGAATTATGACAAAGACTTGTCTTTCCTGCGCAATCGACCTGTGAATCTAACATTCAGTCGTAA
AATAGTGTTTGAAGTGCATTGGTATGGTTTTACAGATGGGCAGGCATGGAAAAATGGCAACCCGAACCAAGTGTGTGGAAGAGTGGTGGATAATATGATG
AGGATATCTGGATTTTTGTTGGACCAAGGTTGGCCATTGTTCATGAGTGAGTTTGGGGTGGATCAAAGAGGGACAAATGTTAATGATAACAGATACTTGG
GATGCTTCCTTGGTGTTGCAGCTGAACTTGACTTTGATTGGGCTTTGTGGACGCTAGTTGGAAGTTATTATTTTAGGCAAGGTGTTATAGGGATGAATGA
GTACTATGGGGTGTTGAATTCGAACTGGCGTGAGACTAGGAATTCAACCTTTTTGCAGCAAATATCTGCCCTCCAATCTCCTTTTCGAGGGCCAGGTGTA
TCAGAAGTTCATCTACATAAAGTGATCTTCCACCCATCAACAGGCCTTTGTGTGTTGAGGAAATCAATGTTCGAGCCACTGAGGTTAGGTCCTTGCACTC
AATCTGAAGCCTGGAACTACACGCCCCAGAAGATACTGTCAGTGAAGGGGACATACTTCTGCTTACAAACAGATGAATTGGCTAAACCAGCAAAACTTGG
TATAATATGCACAGATTCTAATTCAAAATGGGAAGCTATCTCAGATTCCAAAATGCACTTGTCATCTAAAGCCCCCAATGGCACAGCCGTTTGCCTGGAT
ATAGGTTACAACAACACCATTGTTACAAGTACCTGCAAATGTTTGAGTAAAGATAACACATGCGATCCAGAAAGCCAATGGTTTAAATTAGTTAATAGCA
CAAGAAGAAGTTCGACCATGACAAAACCATCGTCACTGATCAGTTCAATCCTCAATTTCCCAGCGAAGGATTTCTTATGGAAGTTCTTAGGCTCAGTATA
A
AA sequence
>Potri.008G183400.2 pacid=42806739 polypeptide=Potri.008G183400.2.p locus=Potri.008G183400 ID=Potri.008G183400.2.v4.1 annot-version=v4.1
MDRIVFFSFLSIFSFLVTFSDVMIPQKHVTALPLSTNSRWIVDENGQRVKLACVNWVSHLEVMVAEGLSEQPMDAIAKRIVSMGFNCVRLTWPVFLVTND
TLGSLTVRQSLRSLGLLESISGIQANNPSIIDLPLLNVYQAVVSSLGDNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFDPDLWITGLTRMASMFNGVP
NVVGMSLRNELRGPKQNVNDWYRYMQKGAEAVHSANPDVIVILSGLNYDKDLSFLRNRPVNLTFSRKIVFEVHWYGFTDGQAWKNGNPNQVCGRVVDNMM
RISGFLLDQGWPLFMSEFGVDQRGTNVNDNRYLGCFLGVAAELDFDWALWTLVGSYYFRQGVIGMNEYYGVLNSNWRETRNSTFLQQISALQSPFRGPGV
SEVHLHKVIFHPSTGLCVLRKSMFEPLRLGPCTQSEAWNYTPQKILSVKGTYFCLQTDELAKPAKLGIICTDSNSKWEAISDSKMHLSSKAPNGTAVCLD
IGYNNTIVTSTCKCLSKDNTCDPESQWFKLVNSTRRSSTMTKPSSLISSILNFPAKDFLWKFLGSV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G13130 Cellulase (glycosyl hydrolase ... Potri.008G183400
[exp]
0 1
AT1G35710 Protein kinase family protein ... Potri.019G129100
[exp]
1.41 0.9066
AT5G60800 Heavy metal transport/detoxifi... Potri.009G007600
[exp]
2.23 0.8728
AT1G61660 bHLH bHLH112 basic helix-loop-helix (bHLH) ... Potri.004G029100
[exp]
2.44 0.8923
AT4G24400 ATCIPK8, PKS11,... SNF1-RELATED PROTEIN KINASE 3.... Potri.002G109000
[exp]
4.00 0.8216
AT2G44260 Plant protein of unknown funct... Potri.009G025102
[exp]
4.89 0.8719
AT4G06744 Leucine-rich repeat (LRR) fami... Potri.014G024300
[exp]
6.48 0.8625
AT5G58350 ZIK2, WNK4 with no lysine (K) kinase 4 (.... Potri.019G128600
[exp]
7.21 0.8241
AT2G28200 C2H2ZnF C2H2-type zinc finger family p... Potri.011G168900
[exp]
8.48 0.8569
AT3G50700 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1... Potri.002G263600
[exp]
8.71 0.8154
AT5G62350 Plant invertase/pectin methyle... Potri.015G128700
[exp]
9.32 0.7924

Potri.008G183400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.