Plant FIBer expression Database

Potri.008G183500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G13120 309 / 9e-97 EMB1745 embryo defective 1745 (.1)
AT4G05523 100 / 6e-24 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001317
[exp]
406 / 2e-133 AT1G13120 481 / 1e-162 embryo defective 1745 (.1)
Lus10006979
[exp]
413 / 3e-132 AT1G13120 479 / 1e-157 embryo defective 1745 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07817 GLE1 GLE1-like protein
Representative CDS sequence
>Potri.008G183500.10 pacid=42807829 polypeptide=Potri.008G183500.10.p locus=Potri.008G183500 ID=Potri.008G183500.10.v4.1 annot-version=v4.1
ATGGGAGCTTTTAAATTGGCACTACGCTGTCCACAGAAAGTGCATGACATTGTAGTTGACCCCGAACCCAATTGGAGTTTCGAGTCTCTTTCATCAGAGC
TCCATTCACTTGAAAAGAAGCTCCATGACTCGTGTTCAGTTCCTGTGCCTTTCACCAAAGTTCAATCTCGAGAGTTTTGGAACAGGAAGGGTGTGAAGAG
AAGTCCCATGGCCTTTGTCATGAGCTTGTCCAATGAAGAGACTGAGCTTTCAGAAAGCGAGAGGGAGGAGGATCATGATCTAAGTATGGTGACTGCAAAA
CGGTTCAATTGCGATGATCTTTATATGAGTGACAGTGACAGTTCTGATTATGAGTTAGCTTTCGATGCTCAGTCCTACTTGATGGATGAAGTAGGGTTAG
TTGAAAGTGCTCTTTTTGAGCGAAGTCACGAGCATCATCTTCAAGTGCAGGAGGATATCAGGAACCAACTTTCAGCAATAGAGACAGAATTAATGACTGA
GCAGGAAAAATCTGCATCTGCATTTGCTCGAATTGAGAAGTATAGGGAAGCAAGGAAGGAACTGGAAAGAAAACTTGATACTCACTATCAACGCAAAATT
GCAGAGGCACTTGACAATCATTTAACTGCCATTCAGCGAGATCATGAACTAAAATCACAAATAGAAGAAAGGAGAATAAGAAGTGATGCAGCTCATGAAG
AGGCCAAGAGAAAGGAAAGGGCTTTTCACGAGGAAAGATCACGGCAAGAAAGAGCTAGAGCAGAAGCAGAGGCCAAACTTAGATTTGAGGAAGCAAAAAT
GGCTGCTGTAGAAGCAGAGAGGAGAGCAGCAAAGGAAGCGGCTGAAAAGGAAGCTACTGAAGCCTCAAAAAGGATAGATGCTGTAGCCTCGCAACAGGAG
GCTGCCAAACCCCAACTAAGTGCTGACTCTTCAAATATGAACCTTCAACCCCAGGGGTCTGGATCTAATAGAACTAAGAAATCACAAACAACAGGTGATG
TTGTGAGGGCTGCACAAACTGCTCTGACTTTAGAGCAGGGAAGATTGCTAAAGCTTAAAGAGCTTGAAGAAGCAAACCGGACATTGATAATGACTTCCAA
TATGGATTTTAGCAACCACGAGAGGCATATTTCTAGGCTGATCAGACAAATAAGGGGGATAAAAGAGAACGTTAGAGTTAAGGCAAGTGAGCTTGTTAAG
ATTTTAAAGAATCCTTCCTGTCCTCAGTCAATCAGTGTTGCGGCATTTGCAAAGAAGGTTGTTTCCCATTGTGAAAGTCCTGATAATGCTGTTTTTGCGT
GTGGACACGTCATTGTTCTTGTTACTTCACAGGTCCCACAAGCAATGGATCTTCTTCTTGCTGAGTTCCATAGAGCTTGCATCTACACTGTCCCAAAGCA
CATAGTGTACTCAAAGTCGGCCTTTGAATCAAAAGAGGCTTACTATAAAGACATTGGACATCGAGAAGATGGTGGGAAGCTTGAGAGTGTGAAGGATTAT
TTGAAACGGTTAGAATCTTACATGAAACTGTATGGGGCTCTGGTTCAGACAGAAGTGCAGGGTGTCCCAAACATTCATGGTCCAAAAGAAGGTTGGGCAT
GGCTTGCGAGGTTCTTAAATGTTCTCCCTGCCAATATGTATACTGCTGTTGCATTGAATGCCTTCCTGCAAACAGCAGGATTTGTTCTCTTCAGAAAATA
CAAATCTCAGTTTACGAAGATGCTCCACATAATCTTAAATGACTTTCTAAATGCATTGAGAGAACGGGAGGATTCAGAACTAAATCCAATAATTCTAGAA
ATTCAGTCTTACATAGAGGACAATAAGTTCCTCCAGGAGCCTGAAGGAAGGAGCTTGCAGGGTCAATTGCTATCTAGTGTCATGGTACCCGAGTCAGAAC
CAAGTAGAGGTTACTACTATTGA
AA sequence
>Potri.008G183500.10 pacid=42807829 polypeptide=Potri.008G183500.10.p locus=Potri.008G183500 ID=Potri.008G183500.10.v4.1 annot-version=v4.1
MGAFKLALRCPQKVHDIVVDPEPNWSFESLSSELHSLEKKLHDSCSVPVPFTKVQSREFWNRKGVKRSPMAFVMSLSNEETELSESEREEDHDLSMVTAK
RFNCDDLYMSDSDSSDYELAFDAQSYLMDEVGLVESALFERSHEHHLQVQEDIRNQLSAIETELMTEQEKSASAFARIEKYREARKELERKLDTHYQRKI
AEALDNHLTAIQRDHELKSQIEERRIRSDAAHEEAKRKERAFHEERSRQERARAEAEAKLRFEEAKMAAVEAERRAAKEAAEKEATEASKRIDAVASQQE
AAKPQLSADSSNMNLQPQGSGSNRTKKSQTTGDVVRAAQTALTLEQGRLLKLKELEEANRTLIMTSNMDFSNHERHISRLIRQIRGIKENVRVKASELVK
ILKNPSCPQSISVAAFAKKVVSHCESPDNAVFACGHVIVLVTSQVPQAMDLLLAEFHRACIYTVPKHIVYSKSAFESKEAYYKDIGHREDGGKLESVKDY
LKRLESYMKLYGALVQTEVQGVPNIHGPKEGWAWLARFLNVLPANMYTAVALNAFLQTAGFVLFRKYKSQFTKMLHIILNDFLNALREREDSELNPIILE
IQSYIEDNKFLQEPEGRSLQGQLLSSVMVPESEPSRGYYY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G13120 EMB1745 embryo defective 1745 (.1) Potri.008G183500
[exp]
0 1
AT1G73100 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)... Potri.003G188700
[exp]
3.00 0.8670 SDG906,SUVH3.3
AT2G17510 EMB2763 EMBRYO DEFECTIVE 2763, ribonuc... Potri.007G059100
[exp]
3.46 0.8538
AT5G63320 NPX1 nuclear protein X1 (.1.2.3) Potri.012G094300
[exp]
4.35 0.8826
AT3G46920 Protein kinase superfamily pro... Potri.006G190200
[exp]
4.35 0.8328
AT3G21480 BRCT domain-containing DNA rep... Potri.010G014700
[exp]
6.00 0.8341
AT5G50010 bHLH sequence-specific DNA binding ... Potri.002G103300
[exp]
8.66 0.8286
AT2G25170 CKH2, SSL2, GYM... SUPPRESSOR OF SLR 2, GYMNOS, C... Potri.006G262200
[exp]
9.79 0.8489 PKL.2
AT3G18770 Autophagy-related protein 13 (... Potri.019G010700
[exp]
10.95 0.8451
AT1G70630 Nucleotide-diphospho-sugar tra... Potri.010G046100
[exp]
10.95 0.8287
Potri.013G133550
[exp]
15.36 0.8037

Potri.008G183500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.