Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18350 288 / 7e-97 ATMKK7, BUD1 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) AT1G73500 271 / 4e-90 ATMKK9 MAP kinase kinase 9 (.1) AT3G21220 230 / 2e-73 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT3G06230 227 / 7e-73 ATMKK8 MAP kinase kinase 8 (.1) AT1G51660 218 / 1e-68 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) AT1G32320 216 / 2e-68 ATMKK10 MAP kinase kinase 10 (.1) AT4G26070 163 / 1e-47 NMAPKK, MKK1, ATMEK1, MEK1 MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, MAP kinase/ ERK kinase 1 (.1.2.3) AT5G56580 160 / 2e-46 ANQ1, ATMKK6 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) AT4G29810 160 / 3e-46 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) AT5G40440 150 / 4e-41 ATMKK3 mitogen-activated protein kinase kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G049500 [exp] 590 / 0 AT1G18350 288 / 1e-96 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.015G030700 [exp] 309 / 9e-105 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.012G043200 [exp] 293 / 2e-98 AT1G73500 381 / 2e-133 MAP kinase kinase 9 (.1) Potri.008G009800 [exp] 230 / 2e-73 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.010G249300 [exp] 228 / 2e-72 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.006G146500 [exp] 171 / 1e-50 AT4G29810 495 / 7e-177 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.018G050800 [exp] 171 / 3e-50 AT4G29810 540 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.018G068500 [exp] 166 / 2e-48 AT5G56580 588 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Potri.003G130000 [exp] 158 / 2e-45 AT5G55090 232 / 2e-72 mitogen-activated protein kinase kinase kinase 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001081 [exp] 242 / 1e-79 AT1G73500 296 / 2e-101 MAP kinase kinase 9 (.1) Lus10035764 [exp] 223 / 2e-70 AT1G51660 500 / 7e-179 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10012938 [exp] 164 / 1e-47 AT5G56580 621 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10040128 [exp] 153 / 4e-46 AT1G73500 186 / 1e-59 MAP kinase kinase 9 (.1) Lus10027623 [exp] 159 / 2e-45 AT4G29810 520 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10034986 [exp] 156 / 1e-44 AT5G56580 605 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10011945 [exp] 154 / 5e-43 AT4G29810 407 / 4e-140 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10001137 [exp] 147 / 2e-40 AT5G40440 711 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Lus10022265 [exp] 147 / 3e-40 AT5G40440 861 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Lus10002096 [exp] 135 / 4e-35 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.008G183700.1 pacid=42807385 polypeptide=Potri.008G183700.1.p locus=Potri.008G183700 ID=Potri.008G183700.1.v4.1 annot-version=v4.1 ATGGTTCTTATTAGACATAGATTGCAACAACATCTTAAGCTTCCCCTTCCAGAATTAGAGATTAGTGAATGCAGCACGCTGTGTACATTCTTGCCTAAGC CCATGTCTGACACTACGATTCAAGGGGTAGGTGACTTCATGGACTTGGAAAAACTCTGCGTTCTAGGACGTGGTAATTATGGCATTGTCTACAAGGTACG CCACGGGCAAACATTAGCCATCTATGCACTCAAAATCATCAAGCAGGATACAAATGAAGCTTATGTATCCCACGAGGCAGAAATCTTAAATTGCATAGAC TCTCCTTTCGTCGTCAAATGCCACGGGGTTTTCGAGCCTCGGGCTGGTGAAAAAGCTATACTCATGGAGTACATGGATGCAGGAACACTTGATGGGATTT TTAGAGCTAACGGTCCCTTCTCCGAAGCTTCACTTGCCCACATTTCCTACCAAGTACTCAATGGCCTCAAGTACCTCCATGAACACAATATTGTCCACTT AGATATAAAGCCTTCGAATCTTCTAGTTAGTAAGGACATGAAAGTGAAAATTGCTGATTTTGGAGTCAGCAAGATTGTCCATGGTATTGTTAGTCGGGCT GCCACCAATTATCACAATATGTGTGAGGGCACACGTGCTTATATGAGTCCTGAAAGGCTGGACTCGCACACATTTGGCTCGGGCTGCGTGTATGCAGGTG ACGTTTGGAGCTTGGGAGTCACTTTATTGGAGCTGCATGTGGGCCATTTTCCATTTTTCCCAGCTGGGAAGAAACCCACTAATTGGATGGAGCTTGTATT GGTGATATGTTTTGGAGAATCCCCTAGCTTCCCAAAGGAAGCATCAGAGGAATTCAGGAGCTTCATCAAGTGTTGCTTGGAGAAGGAACCGAGTAAGAGA TGGACAGTCTCGCAACTCCTCTCACATCCCTATGTTTGCTTAGGGGAGAAACTGGGGAAATGA
AA sequence Show only first row Show all	>Potri.008G183700.1 pacid=42807385 polypeptide=Potri.008G183700.1.p locus=Potri.008G183700 ID=Potri.008G183700.1.v4.1 annot-version=v4.1 MVLIRHRLQQHLKLPLPELEISECSTLCTFLPKPMSDTTIQGVGDFMDLEKLCVLGRGNYGIVYKVRHGQTLAIYALKIIKQDTNEAYVSHEAEILNCID SPFVVKCHGVFEPRAGEKAILMEYMDAGTLDGIFRANGPFSEASLAHISYQVLNGLKYLHEHNIVHLDIKPSNLLVSKDMKVKIADFGVSKIVHGIVSRA ATNYHNMCEGTRAYMSPERLDSHTFGSGCVYAGDVWSLGVTLLELHVGHFPFFPAGKKPTNWMELVLVICFGESPSFPKEASEEFRSFIKCCLEKEPSKR WTVSQLLSHPYVCLGEKLGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18350		ATMKK7, BUD1	MAP KINASE KINASE7, BUSHY AND ...		Potri.008G183700 [exp]	0	1
					Potri.002G122400 [exp]	2.00	0.9699
AT1G03220			Eukaryotic aspartyl protease f...		Potri.013G070325 [exp]	3.46	0.9510
AT1G03220			Eukaryotic aspartyl protease f...		Potri.013G070300 [exp]	4.89	0.9522
AT2G26110			Protein of unknown function (D...		Potri.001G008080 [exp]	8.83	0.9406
AT5G42380		CML39, CML37	CALMODULIN LIKE 39, calmodulin...		Potri.002G132500 [exp]	9.48	0.9434
					Potri.002G122200 [exp]	13.74	0.9202
AT4G34410	AP2_ERF	RRTF1 (Redox Re...	redox responsive transcription...		Potri.004G141200 [exp]	17.32	0.9317
AT3G10080			RmlC-like cupins superfamily p...		Potri.010G238100 [exp]	17.74	0.9254
					Potri.006G128250 [exp]	23.08	0.9064
					Potri.004G225350 [exp]	23.62	0.8813

Compare expression of checked genes

Potri.008G183700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.